View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5771-Insertion-2 (Length: 506)
Name: NF5771-Insertion-2
Description: NF5771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5771-Insertion-2 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 269 - 506
Target Start/End: Original strand, 40728290 - 40728527
Alignment:
| Q |
269 |
tagtattccatatgctgttctgtccaccaaagtcaacccccaagctttcacaaccaactttgtaaacaaaaattgtatcccaaaaaatgaaacattaagc |
368 |
Q |
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| T |
40728290 |
tagtattccatatgctgttctgtccaccaaagtcaacccccaagctttcacaaccaactttgtaaacaaaaattgtatcccaaaaaatgaaacattaagc |
40728389 |
T |
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| Q |
369 |
ttcaaaaatataagtgttgacaagtcaattttcccctttatcaaattattactcttcatcatggccttaaatccataagagtcttctaaaacggtaacaa |
468 |
Q |
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| T |
40728390 |
ttcaaaaatataagtgttgacaaaccaattttcccctttatcaaattattactcttcatcatggccttaaatccatatgagtcttctaaaacggtaacaa |
40728489 |
T |
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| Q |
469 |
cactagctaattgccaaattattgtaagatacaaaatc |
506 |
Q |
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| T |
40728490 |
cactagctaattgccaaattattgtaagatacaaaatc |
40728527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 40728090 - 40728220
Alignment:
| Q |
69 |
atcaacctacatcacacacggtaattctccagctgaacatctttatccttcaaaggctcatactctccatgataaacttcaagatgatcagacaaagcag |
168 |
Q |
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| T |
40728090 |
atcaacctacatcacacatggtaattctccagctgaacatctttatccttcaaaggctcatactctccatgataaacttcaagatgatcagacaaagcag |
40728189 |
T |
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| Q |
169 |
actcgtcaatactttgatgatgataagactt |
199 |
Q |
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| T |
40728190 |
acttgtcaatactttgatgatgataagactt |
40728220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 40728023 - 40728070
Alignment:
| Q |
7 |
acatatatgcttgaattattcaataaatttcacaaaacaataattcac |
54 |
Q |
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| T |
40728023 |
acatatctgcttgaattattcaataaatttcataaaacaataattcac |
40728070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 40724123 - 40724195
Alignment:
| Q |
128 |
atactctccatgataaacttcaagatgatcagacaaagcagactcgtcaatactttgatgatgataagacttg |
200 |
Q |
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| T |
40724123 |
atactctccatgataaacttcaagataatcgaacaaagcagaattgttaatactctaatgatggtaagacttg |
40724195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 40724280 - 40724310
Alignment:
| Q |
318 |
acaaccaactttgtaaacaaaaattgtatcc |
348 |
Q |
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| T |
40724280 |
acaaccaactttgtaaacaaaaattgtatcc |
40724310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 10108240 - 10108130
Alignment:
| Q |
84 |
acacggtaattctccagctgaacatctttatccttcaaaggctcatactctccatgataaacttcaagatgatcagacaaagcagactcgtcaatacttt |
183 |
Q |
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| T |
10108240 |
acacgataattctccaattgaacatccttagccgtcaatggaacatactctccaagataaacttcaagatgatcagccaaagcagatttatcaatattct |
10108141 |
T |
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| Q |
184 |
gatgatgataa |
194 |
Q |
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| T |
10108140 |
catgatgataa |
10108130 |
T |
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