View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5771_high_1 (Length: 256)
Name: NF5771_high_1
Description: NF5771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5771_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8297398 - 8297638
Alignment:
| Q |
1 |
ttcttcttcttcctcctcttcagaatcaacatcaccatcttcttcatcctcctcttcagcagcagcaccattaaaaccaagatcaagatcttcctcgtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8297398 |
ttcttcttcttcctcctcttcagaatcaacatcaccatcttcttcatcctcctcttcagcagcagcaccattaaaaccaagatcaagatcttcctcgttg |
8297497 |
T |
|
| Q |
101 |
ccgtcatcttctttttcttgctcttctttaatacgcgatttgagagcattgaattgttcattggtcttacgacatgtaaaagtgaggtcgttgtgcgaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
8297498 |
ccgtcatcttctttttcttgctcttctttaatacgagatttgagagcattgaattgttcatcggtcttacgacatataaaagtgaggtcgttgtccgaag |
8297597 |
T |
|
| Q |
201 |
tacgaaagtgattcgtcatgaaaagaggatcaagaactaac |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8297598 |
tacgaaagtgattcgtcatgaaaagaggatcaagaactaac |
8297638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 8300905 - 8301153
Alignment:
| Q |
2 |
tcttcttcttcctcctcttcagaatcaacatcaccatcttcttcatcctcctcttc---------agcagcagcaccattaaaaccaagatcaagatctt |
92 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8300905 |
tcttcttcttcctcctcttcagcatcaacatcaccatcttcttcctcctcctcttcctcctctacagcagcagcaccattaaaatcaagatcaagatctt |
8301004 |
T |
|
| Q |
93 |
cctcgtcgccgtcatcttctttttcttgctcttctttaatacgcgatttgagagcattgaattgttcattggtcttacgacatgtaaaagtgaggtcgtt |
192 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |||||||||| | ||||||||||| | |
|
|
| T |
8301005 |
cctcgttgccgtcatcttctttttcttgttcttccttaatacgtgatttgagagcattgaattgttcattggccttacgacatagagaagtgaggtcggt |
8301104 |
T |
|
| Q |
193 |
gtgcgaagtacgaaagtgattcgtcatgaaaagaggatcaagaactaac |
241 |
Q |
| |
|
| |||||| |||||| |||| ||||||||| |||||||||| |||| |
|
|
| T |
8301105 |
gatcgaagtgagaaagtaattcttcatgaaaattggatcaagaaataac |
8301153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 18279188 - 18279069
Alignment:
| Q |
122 |
tcttctttaatacgcgatttgagagcattgaattgttcattggtcttacgacatgtaaaagtgaggtcgttgtgcgaagtacgaaagtgattcgtcatga |
221 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||| || ||| ||||||| || |||||| ||| ||||||| |||||| |
|
|
| T |
18279188 |
tcttccttaatacacgatttgagagcattgaattgttcattggccttacaacatatagaagcgaggtcggtgatcgaagtgagaaggtgattcttcatga |
18279089 |
T |
|
| Q |
222 |
aaagaggatcaagaactaac |
241 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18279088 |
aaagaggatcaagaactaac |
18279069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8297356 - 8297400
Alignment:
| Q |
1 |
ttcttcttcttcctcctcttcagaatcaacatcaccatcttcttc |
45 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
8297356 |
ttcttcttcttcctcctcttctgcatcaacatcaccgtcttcttc |
8297400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University