View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5771_high_2 (Length: 250)
Name: NF5771_high_2
Description: NF5771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5771_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 28523216 - 28523437
Alignment:
| Q |
18 |
aaacttggtagacaacttgagagctaccataatgcaacatcacttacattttgtatccaagtaagacaatttggagaaatatgatgttatttgagcatat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28523216 |
aaacttggtagacaacttgagagctaccataatgcaacatcacttacattttgtatccaagtaagacaatttggagaaatatggtgttatttgagcatat |
28523315 |
T |
|
| Q |
118 |
aaggtttttcttttaatgcaagttgccaatgctatatggctatacaatttttcaacttaaccaaatcaatctttttgaaccaggatggacctcaagctgg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28523316 |
aaggtttttcttttaatgcaagttgccaatgctatatggctatacaatttttcaactcaaccaaatcaatctttttgaaccaggatggacctcaagctgg |
28523415 |
T |
|
| Q |
218 |
acaatcagttcctcatgttcat |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28523416 |
acaatcagttcctcatgttcat |
28523437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 28457065 - 28457132
Alignment:
| Q |
18 |
aaacttggtagacaacttgagagctaccataatgcaacatcacttacattttgtatccaagtaagaca |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||||| |
|
|
| T |
28457065 |
aaacttggtagacaacttgagagctaccataatgcatcatcacttagacttgctatccaagtaagaca |
28457132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 28457269 - 28457309
Alignment:
| Q |
199 |
aggatggacctcaagctggacaatcagttcctcatgttcat |
239 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
28457269 |
aggatggaccccaagctggacaatcggttcctcatgttcat |
28457309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University