View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5772-Insertion-3 (Length: 560)
Name: NF5772-Insertion-3
Description: NF5772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5772-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Original strand, 24917072 - 24917471
Alignment:
| Q |
8 |
ttcataatctcaaaacaagtatatataaagggttgaccnnnnnnnncatcatagttaaataaattgtaaaatattgatcgtacttacatgttactcctct |
107 |
Q |
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| T |
24917072 |
ttcataatctcaaaacaagtatatataaagggttgaccaaaaaaaacatcatagttaaataaattgtaaaatattgatcgtacttacatgttactcctct |
24917171 |
T |
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| Q |
108 |
gactttattccttgaggaatcatttgcaacagcttctgaggttgtttttgttatcaatgtaaaaaagcttttgaaaacagacttgaaatatgtcatagta |
207 |
Q |
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| T |
24917172 |
gactttattcctcgaggaatcatttgcaacagcttctgaggttgtttttgttatcaatgtaaaaaagcttttgaaaacagacttgaaatatgtcatagta |
24917271 |
T |
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| Q |
208 |
ctatgattatgctcatgattgtgcttatttgtgacattggtattgcttgcactaccacttttgtgaccaattttgtttcttctttgcttagattgatgca |
307 |
Q |
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| T |
24917272 |
ctatgattatgctcatgattgtgcttatttgtgacattggtattgcttgcactaccacttttgtgaccaattttgtttcttctttggttagattgatgca |
24917371 |
T |
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| Q |
308 |
agtttgggcttgatggtttcttcatttgttgaagctaaagagtattcaatttcaataacatctctttttaaccaatataatcaaaaggaatatgatttaa |
407 |
Q |
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| T |
24917372 |
agtttgggcttgatggtttcttcatttgttgaagctaaagagtattcaatttcaataacatctctttttaaccaatataatcaaaaggaatatgatttaa |
24917471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 560
Target Start/End: Original strand, 24917589 - 24917620
Alignment:
| Q |
529 |
taaagaaagagtgttatcagctacctaccaag |
560 |
Q |
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| T |
24917589 |
taaagaaagagtgttatcagctacctaccaag |
24917620 |
T |
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