View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5772-Insertion-4 (Length: 252)
Name: NF5772-Insertion-4
Description: NF5772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5772-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 35541874 - 35541987
Alignment:
| Q |
135 |
tactggattgcaatcggtgttagaggtagaaaacctaacacaccacaagccctaacaatccttaactacaaaacaatctctgcatcaatcggtgttagag |
234 |
Q |
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| T |
35541874 |
tactggattgcaatcggtgttagaggtagaaaacctaacacaccacaagccctaacaatccttaactacaaaacaatctctgcatcaatcggtgttagag |
35541973 |
T |
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| Q |
235 |
gtagaaaaccaaac |
248 |
Q |
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| T |
35541974 |
gtagaaaaccaaac |
35541987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 35541746 - 35541846
Alignment:
| Q |
7 |
atcacaaactacttgtagtagaagctgatggaaactacgtgcacccatttgcagttgatgacatagacatatactcaggtgaaacctactcagtactcat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35541746 |
atcacaaactacttgtagtagaagctgatggaaactacgtgcacccatttgcagttgatgacatagacatatactcaggtgaaacctactcagtactcat |
35541845 |
T |
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| Q |
107 |
t |
107 |
Q |
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| T |
35541846 |
t |
35541846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 35509120 - 35509213
Alignment:
| Q |
7 |
atcacaaactacttgtagtagaagctgatggaaactacgtgcacccatttgcagttgatgacatagacatatactcaggtgaaacctactcagt |
100 |
Q |
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| T |
35509120 |
atcacaaacttattgtagtggaagcagatggaaactatgtgcacccattcgcagtcgatgacatcgacatctactcaggtgaaacctactcagt |
35509213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 35509248 - 35509330
Alignment:
| Q |
135 |
tactggattgcaatcggtgttagaggtagaaaacctaacacaccacaagccctaacaatccttaactacaaaacaatctctgc |
217 |
Q |
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| T |
35509248 |
tactggctttcaatcggagttagaggtagaaaaccaagcacaccacaagccctaacaatccttaactacaaaccactctctgc |
35509330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 35527337 - 35527414
Alignment:
| Q |
27 |
gaagctgatggaaactacgtgcacccatttgcagttgatgacatagacatatactcaggtgaaacctactcagtactc |
104 |
Q |
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| T |
35527337 |
gaagcagatggaaactacgtgcacccattcacggttgatagcatagacatctactcaggtgaaacctactcagtactc |
35527414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 202
Target Start/End: Original strand, 35527482 - 35527512
Alignment:
| Q |
172 |
acacaccacaagccctaacaatccttaacta |
202 |
Q |
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| T |
35527482 |
acacaccacaagccctaacaatccttaacta |
35527512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 35541959 - 35541997
Alignment:
| Q |
145 |
caatcggtgttagaggtagaaaacctaacacaccacaag |
183 |
Q |
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| T |
35541959 |
caatcggtgttagaggtagaaaaccaaacacgccacaag |
35541997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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