View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5772_high_6 (Length: 379)

Name: NF5772_high_6
Description: NF5772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5772_high_6
NF5772_high_6
[»] chr8 (8 HSPs)
chr8 (19-359)||(9577436-9577779)
chr8 (266-343)||(13135572-13135649)
chr8 (267-343)||(18668979-18669055)
chr8 (268-343)||(13117838-13117913)
chr8 (266-343)||(13009787-13009864)
chr8 (266-342)||(13011028-13011104)
chr8 (266-343)||(26442007-26442084)
chr8 (274-334)||(11537262-11537322)
[»] chr7 (5 HSPs)
chr7 (268-343)||(41866260-41866335)
chr7 (267-342)||(28261753-28261828)
chr7 (266-341)||(48918555-48918630)
chr7 (274-334)||(31656835-31656895)
chr7 (274-334)||(29218221-29218281)
[»] chr5 (4 HSPs)
chr5 (268-341)||(15369476-15369549)
chr5 (268-341)||(16946302-16946375)
chr5 (274-342)||(19732067-19732135)
chr5 (274-326)||(34693775-34693827)
[»] scaffold0971 (1 HSPs)
scaffold0971 (266-342)||(1335-1411)
[»] chr6 (1 HSPs)
chr6 (268-344)||(29022863-29022939)
[»] chr2 (5 HSPs)
chr2 (266-342)||(2388806-2388882)
chr2 (274-334)||(35514112-35514171)
chr2 (274-334)||(3449566-3449625)
chr2 (274-334)||(38377299-38377358)
chr2 (274-333)||(1211740-1211799)
[»] chr4 (7 HSPs)
chr4 (267-342)||(23458688-23458763)
chr4 (266-341)||(56191433-56191508)
chr4 (267-341)||(56435056-56435130)
chr4 (268-341)||(42636393-42636466)
chr4 (274-334)||(20916804-20916863)
chr4 (274-333)||(31032755-31032813)
chr4 (274-332)||(35534150-35534207)
[»] chr1 (2 HSPs)
chr1 (268-341)||(45764995-45765068)
chr1 (274-334)||(36904656-36904715)
[»] scaffold0899 (1 HSPs)
scaffold0899 (266-341)||(2451-2526)
[»] chr3 (2 HSPs)
chr3 (274-334)||(26379277-26379336)
chr3 (274-334)||(29383688-29383747)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 9577436 - 9577779
Alignment:
Q  19 ccatttcctataggtattatacatttggtaaaataaaatagaatgatatgactaaaaaa-ggtccaaaggtgaataaaaatattgtt--gagttgaaatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||     
T  9577436 ccatttcctataggtattatacatttggtaaaataaaatagaatgatatgactaaaaaaaggtccaaaggtgaataaaaatattgttttgagtttaaatg 9577535  T
Q  116 tgaacaacaaaatatattcaatcnnnnnnnntaaactcaacaatatatatgcaaatgcagccgaaaaacgtaaagctaatattttgttatttatcaccaa 215  Q
    |||||||||||||||||||  ||        |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9577536 tgaacaacaaaatatattctctcaaaaaaaataaaatcaacaatatatatgcaaatgcagccgaaaaacgtaaagctaatattttgttatttataaccaa 9577635  T
Q  216 taaatataactacttacccaaattcaataaatttaagcccaacaacaagcatggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggt 315  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9577636 taaatataactacttaggcaaattcaataaatttaagcccaataacaagcatggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggt 9577735  T
Q  316 ccccagttcgagcctgggcgaagccattcatctttattttttct 359  Q
    ||||||||| | |||||||||||||| ||| |||| ||| ||||    
T  9577736 ccccagttcaaacctgggcgaagccaatcaactttttttcttct 9577779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 13135572 - 13135649
Alignment:
Q  266 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13135572 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 13135649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 18669055 - 18668979
Alignment:
Q  267 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18669055 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 18668979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 13117838 - 13117913
Alignment:
Q  268 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13117838 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 13117913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 13009864 - 13009787
Alignment:
Q  266 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 343  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13009864 atggtttcgtggtgtagttggttattacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 13009787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 13011104 - 13011028
Alignment:
Q  266 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  13011104 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcaaacctgggcgaagccat 13011028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 26442084 - 26442007
Alignment:
Q  266 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||||||||    
T  26442084 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccatt 26442007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 11537262 - 11537322
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 334  Q
    |||||||||| ||||||||||  ||||| |||||||  ||||||||||||||| |||||||    
T  11537262 gtggtgtagtcggttatcacgctagtctcacacactagaggtccccagttcgaacctgggc 11537322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 41866335 - 41866260
Alignment:
Q  268 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41866335 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 41866260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 28261828 - 28261753
Alignment:
Q  267 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28261828 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttctagcctgggcgaagccat 28261753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 48918630 - 48918555
Alignment:
Q  266 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||||||    
T  48918630 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 48918555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 31656895 - 31656835
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 334  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||||    
T  31656895 gtggtgtagttggttatcacgttagtctcacacactaaaggtccccagttcgaacctgggc 31656835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 29218281 - 29218221
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 334  Q
    |||||||||||||||||||||  ||||| |||||||  ||||||||||||||| |||||||    
T  29218281 gtggtgtagttggttatcacgctagtctcacacactagaggtccccagttcgaacctgggc 29218221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 15369476 - 15369549
Alignment:
Q  268 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15369476 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 15369549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 16946375 - 16946302
Alignment:
Q  268 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||||    
T  16946375 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgagtccgggcgaagcca 16946302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 19732135 - 19732067
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||| || | |||||| |||||    
T  19732135 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcaagtccgggcgacgccat 19732067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 34693827 - 34693775
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcga 326  Q
    |||||||||||||||||||||  ||||| |||||||  |||||||| ||||||    
T  34693827 gtggtgtagttggttatcacgctagtctcacacactagaggtccccggttcga 34693775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0971 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 1411 - 1335
Alignment:
Q  266 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||    
T  1411 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccat 1335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 29022863 - 29022939
Alignment:
Q  268 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccattc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||    
T  29022863 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccattc 29022939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 2388806 - 2388882
Alignment:
Q  266 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||    
T  2388806 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccat 2388882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 35514112 - 35514171
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 334  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  35514112 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 35514171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 3449625 - 3449566
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 334  Q
    |||||||||| ||||||||||| ||||| ||||||| |||||| ||||||||| |||||||    
T  3449625 gtggtgtagt-ggttatcacgttagtcttacacactaaaggtctccagttcgatcctgggc 3449566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 38377299 - 38377358
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 334  Q
    |||||||||| ||||||||||| ||||| ||||||| |||||| ||||||||| |||||||    
T  38377299 gtggtgtagt-ggttatcacgttagtcttacacactaaaggtctccagttcgatcctgggc 38377358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 333
Target Start/End: Complemental strand, 1211799 - 1211740
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctggg 333  Q
    |||||||||| ||||||||||  ||||| |||||||  ||||||||||||||| ||||||    
T  1211799 gtggtgtagtcggttatcacgctagtctcacacactagaggtccccagttcgaacctggg 1211740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 23458763 - 23458688
Alignment:
Q  267 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||    
T  23458763 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccat 23458688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 56191508 - 56191433
Alignment:
Q  266 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||||||    
T  56191508 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 56191433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 56435056 - 56435130
Alignment:
Q  267 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||||||    
T  56435056 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 56435130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 42636393 - 42636466
Alignment:
Q  268 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||||||    
T  42636393 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 42636466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 20916863 - 20916804
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 334  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  20916863 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 20916804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 31032755 - 31032813
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctggg 333  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  31032755 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagttcgatcctggg 31032813  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 35534150 - 35534207
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgg 332  Q
    |||||||||| ||||||||||| ||||| ||||||| |||||| ||||||||| |||||    
T  35534150 gtggtgtagt-ggttatcacgttagtcttacacactaaaggtctccagttcgatcctgg 35534207  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 45765068 - 45764995
Alignment:
Q  268 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||||||    
T  45765068 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 45764995  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 36904715 - 36904656
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 334  Q
    |||||||||| ||||||||||| ||||| ||||||| |||||| ||||||||| |||||||    
T  36904715 gtggtgtagt-ggttatcacgttagtcttacacactaaaggtctccagttcgatcctgggc 36904656  T

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Target: scaffold0899 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 2451 - 2526
Alignment:
Q  266 atggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 341  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || || |||||||||||    
T  2451 atggtttagtggtgtagttggttatcacgtcagtctaacacactgaaggtctccagtttgaaccagggcgaagcca 2526  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 26379336 - 26379277
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 334  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  26379336 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 26379277  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 29383688 - 29383747
Alignment:
Q  274 gtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggc 334  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  29383688 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 29383747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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