View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5772_low_2 (Length: 459)

Name: NF5772_low_2
Description: NF5772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5772_low_2
NF5772_low_2
[»] chr1 (7 HSPs)
chr1 (11-444)||(31374803-31375236)
chr1 (241-359)||(13142865-13142983)
chr1 (236-358)||(2753024-2753145)
chr1 (219-284)||(40707722-40707787)
chr1 (291-359)||(32018688-32018756)
chr1 (219-343)||(38669510-38669634)
chr1 (221-359)||(51127088-51127226)
[»] chr3 (8 HSPs)
chr3 (219-344)||(50385109-50385234)
chr3 (219-359)||(43107846-43107986)
chr3 (212-359)||(4957566-4957713)
chr3 (219-359)||(9798530-9798670)
chr3 (256-352)||(40709211-40709307)
chr3 (219-325)||(16930284-16930390)
chr3 (298-343)||(6130650-6130695)
chr3 (222-303)||(54739132-54739213)
[»] chr4 (14 HSPs)
chr4 (215-359)||(51084651-51084795)
chr4 (223-349)||(52254792-52254918)
chr4 (219-347)||(54234529-54234656)
chr4 (239-359)||(1180086-1180206)
chr4 (245-359)||(5382210-5382326)
chr4 (219-340)||(13610822-13610943)
chr4 (256-357)||(33880850-33880951)
chr4 (219-361)||(34458637-34458779)
chr4 (219-359)||(47681622-47681762)
chr4 (219-350)||(43137085-43137216)
chr4 (265-335)||(35452022-35452092)
chr4 (239-343)||(15521755-15521859)
chr4 (260-348)||(21680562-21680649)
chr4 (299-359)||(40711687-40711747)
[»] chr2 (10 HSPs)
chr2 (215-340)||(30618154-30618279)
chr2 (219-351)||(19090296-19090428)
chr2 (219-359)||(17913881-17914021)
chr2 (239-359)||(30378310-30378429)
chr2 (219-345)||(34640498-34640624)
chr2 (215-343)||(41533370-41533498)
chr2 (215-324)||(5306088-5306197)
chr2 (239-352)||(15609735-15609848)
chr2 (219-326)||(38119996-38120103)
chr2 (250-339)||(13293540-13293629)
[»] scaffold0004 (1 HSPs)
scaffold0004 (219-359)||(35207-35342)
[»] chr5 (9 HSPs)
chr5 (222-359)||(28283642-28283777)
chr5 (219-350)||(34582985-34583116)
chr5 (222-338)||(29454623-29454739)
chr5 (219-351)||(5862688-5862820)
chr5 (219-347)||(40896994-40897122)
chr5 (215-326)||(10542347-10542458)
chr5 (224-359)||(16719652-16719787)
chr5 (307-352)||(37508969-37509014)
chr5 (281-357)||(1669680-1669756)
[»] chr8 (5 HSPs)
chr8 (219-343)||(13582670-13582794)
chr8 (222-338)||(42281202-42281318)
chr8 (222-359)||(29909273-29909410)
chr8 (219-299)||(16576676-16576756)
chr8 (228-320)||(33075279-33075371)
[»] chr7 (8 HSPs)
chr7 (215-325)||(12218636-12218746)
chr7 (246-359)||(35224760-35224874)
chr7 (219-340)||(9626303-9626424)
chr7 (261-352)||(32521128-32521219)
chr7 (219-299)||(5738542-5738622)
chr7 (215-343)||(9823582-9823710)
chr7 (215-343)||(10725507-10725635)
chr7 (239-359)||(26425756-26425876)
[»] chr6 (5 HSPs)
chr6 (219-287)||(16166202-16166270)
chr6 (222-343)||(14265804-14265925)
chr6 (240-324)||(17314404-17314488)
chr6 (219-303)||(6138558-6138642)
chr6 (262-357)||(4450678-4450773)
[»] scaffold0591 (1 HSPs)
scaffold0591 (223-359)||(1200-1335)


Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Original strand, 31374803 - 31375236
Alignment:
Q  11 cacagaaccagtcataccatttgtagcataactcgccttcttgcctgaaacaataacagaaaaaggctcaaagttatatggtaaaaagcaaaacccagat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31374803 cacagaaccagtcataccatttgtagcataactcgccttcttgcctgaaacaataacagaaaaaggctcaaagttatatggtaaaaagcaaaacccagat 31374902  T
Q  111 aaagcagataactacatactacaatccactggtaaattctgttcaacttttacaggaagcaaaattgattctagaattgattttgacgttatttggatgc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31374903 aaagcagataactacatactacaatccactggtaaattctgttcaacttttacaggaagcaaaattgattctagaattgattttgacgttatttggatgc 31375002  T
Q  211 tcttgggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31375003 tcttgggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctc 31375102  T
Q  311 aagctttttaaaaagctcattattttaaataggccaggctaatgcttatcatgctctcaagtataattgatattgcctccagaattggtaatttgaagat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31375103 aagctttttaaaaagctcattattttaaataggccaggctaatgcttatcatgctctcaagtataattgatattgcctccagaattggtaatttgaagat 31375202  T
Q  411 acaatttcgagttttttcctctgaaattgatttt 444  Q
    |||||||||||||| |||||||||||||||||||    
T  31375203 acaatttcgagtttcttcctctgaaattgatttt 31375236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 241 - 359
Target Start/End: Complemental strand, 13142983 - 13142865
Alignment:
Q  241 tcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaat 340  Q
    ||||||||||||| |||||||||||||||| ||| |||| ||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  13142983 tcaggggcctatggcccggcctacttaaagctcgactcgacctagctcgtttattaaataggttaggcacaagctttttaaaaagctcattaatttaaat 13142884  T
Q  341 aggccaggctaatgcttat 359  Q
    |||| ||| ||| ||||||    
T  13142883 aggctaggttaaggcttat 13142865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 236 - 358
Target Start/End: Original strand, 2753024 - 2753145
Alignment:
Q  236 gcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattt 335  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||| | |||||| |||||||||||| || |||||| |||||| || || | |||| ||    
T  2753024 gcccgtcaagggcctatgaccccgcctacttaaagtttggctcggtccagctcgtttattaaataggctaggctcaaacttttt-aatagtttattaatt 2753122  T
Q  336 taaataggccaggctaatgctta 358  Q
    |||||||| ||| ||||||||||    
T  2753123 taaataggtcagactaatgctta 2753145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 40707722 - 40707787
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggccta 284  Q
    |||||||||||||||| |||||||||||||||||| | |||| |||| ||||  ||||||||||||    
T  40707722 tgggaataggccaggccgcccgtcaggggcctatggctcggcttactgaaagcccggctcggccta 40707787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 32018756 - 32018688
Alignment:
Q  291 ttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaatgcttat 359  Q
    ||||||||||||||| |||||| | ||||||||||||| | | |||||| ||| |||||||| ||||||    
T  32018756 ttattaaataggttaggctcaaaccttttaaaaagctcgtcaatttaaacaggtcaggctaaggcttat 32018688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 343
Target Start/End: Original strand, 38669510 - 38669634
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||||||||| || |||||||||||||||    |||||||| ||||  |||  |||||||||||| ||| |||||  || | |||  |||||||    
T  38669510 tgggaataggccaggccgctcgtcaggggcctatggtttggcctactaaaagcccggtccggcctagctcgtttaataaatgagtcaagcttgagctttt 38669609  T
Q  319 taaaaagctcattattttaaatagg 343  Q
    ||||||||  |||| ||||| ||||    
T  38669610 taaaaagcctattaatttaattagg 38669634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 359
Target Start/End: Complemental strand, 51127226 - 51127088
Alignment:
Q  221 ggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagcttttta 320  Q
    ||||||||||||||  | ||||||||| ||||| | ||||||||| | ||| | | | |||||| |||| ||| |||||  || | ||| ||||||||||    
T  51127226 ggaataggccaggccactcgtcaggggtctatggctcggcctactaatagtccagtttggcctaactcgtttaataaatgtgtcaagcttaagcttttta 51127127  T
Q  321 aaaagctcattattttaaataggccaggctaatgcttat 359  Q
    |||||   |||| ||||| |||| |||||| ||||||||    
T  51127126 aaaaggctattaatttaattaggtcaggcttatgcttat 51127088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 219 - 344
Target Start/End: Original strand, 50385109 - 50385234
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||||  |||||| ||||    
T  50385109 tgggaataggccaggccgctcgtcaggggcctatgacccgacctacttaaagctcggctcgacctaactcgtttattaaataggttagactcaagttttt 50385208  T
Q  319 taaaaagctcattattttaaataggc 344  Q
    |||||||||||||| |||||||||||    
T  50385209 taaaaagctcattaatttaaataggc 50385234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 43107986 - 43107846
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||| || || |||| |||  |||||||||| |||||||||||||| ||||||||||||| |||| |||||||||| |||  ||||||||||||    
T  43107986 tgggaataggtcaagccgcccctcaaaggcctatgactcggcctacttaaagatcggctcggcctaactcgtttattaaataagttgagctcaagctttt 43107887  T
Q  319 taaaaagctcattattttaaataggccaggctaatgcttat 359  Q
    ||||||  |||||| |||||||||| |||| ||| ||||||    
T  43107886 taaaaaattcattaatttaaataggtcaggataaagcttat 43107846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 212 - 359
Target Start/End: Original strand, 4957566 - 4957713
Alignment:
Q  212 cttgggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctca 311  Q
    |||||| ||||||||||  |||| || | ||||  | ||||||||||||||||| ||| | ||||||||||||| ||| ||||||||||||| | ||| |    
T  4957566 cttggggtgggaataggttaggccgctcatcagtagtctatgacccggcctactaaaattccggctcggcctagttcgtttattaaataggtaaggctta 4957665  T
Q  312 agctttttaaaaagctcattattttaaataggccaggctaatgcttat 359  Q
    |||||||||||||| || ||| ||||||||||| ||||||| ||||||    
T  4957666 agctttttaaaaagttcgttaatttaaataggctaggctaaggcttat 4957713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 9798670 - 9798530
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||  ||||||||| |||  |||||||| ||| |||||   ||| |||  |||||||    
T  9798670 tgggaataggccaggctgtccatcaggggcctatgactcggcctacaaaaagttcggttcgatctagctcgtttaataaatgatttaagcttgagctttt 9798571  T
Q  319 taaaaagctcattattttaaataggccaggctaatgcttat 359  Q
    ||||||||   ||| ||||| |||||| |||| | ||||||    
T  9798570 taaaaagccttttaatttaattaggccgggcttaggcttat 9798530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 40709211 - 40709307
Alignment:
Q  256 ccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaa 352  Q
    |||||||||||||||| || |||| | ||||||  ||||||||||||||| ||||||  ||||||||||| |||||| |||||||||| ||| ||||    
T  40709211 ccggcctacttaaagtccgactcgacttagctcatttattaaataggttaggctcaaattttttaaaaaggtcattaatttaaataggtcagactaa 40709307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 325
Target Start/End: Original strand, 16930284 - 16930390
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||||||| | | ||||| || | ||||| || ||||||||||||||  | |||||| || |||| |||||| |||||||| ||||||||||||    
T  16930284 tgggaataggccagaccgtccgtcgggagtctatggcctggcctacttaaagtctgactcggcttaactcgtttattatataggttaggctcaagctttt 16930383  T
Q  319 taaaaag 325  Q
     ||||||    
T  16930384 caaaaag 16930390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 6130650 - 6130695
Alignment:
Q  298 ataggttatgctcaagctttttaaaaagctcattattttaaatagg 343  Q
    |||||||| ||||||||||||||||||| |||||| ||||||||||    
T  6130650 ataggttaagctcaagctttttaaaaagttcattaatttaaatagg 6130695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 54739132 - 54739213
Alignment:
Q  222 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggt 303  Q
    |||||||| |||| || ||||||||| ||||| ||||||||||| |||||| ||   |||||| |||| ||| |||||||||    
T  54739132 gaataggcgaggccgctcgtcaggggtctatggcccggcctactgaaagtttggtctggcctaactcgtttaataaataggt 54739213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 215 - 359
Target Start/End: Complemental strand, 51084795 - 51084651
Alignment:
Q  215 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 314  Q
    ||||||| |||||| |||||   ||||||||||||| ||||||||||||||||| |  |||||| |||||||||| ||||||||||||||| ||||||||    
T  51084795 gggatggaaataggtcaggccatccgtcaggggcctctgacccggcctacttaatgcccggctcagcctagctcgtttattaaataggttaggctcaagc 51084696  T
Q  315 tttttaaaaagctcattattttaaataggccaggctaatgcttat 359  Q
    |||||||||||||||||| ||||||||||| ||||| | ||||||    
T  51084695 tttttaaaaagctcattaatttaaataggctaggctcaggcttat 51084651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 223 - 349
Target Start/End: Original strand, 52254792 - 52254918
Alignment:
Q  223 aataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaa 322  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||  |||||||||||  | | |||||||| ||||||  ||||||||||||| |    
T  52254792 aataggccaggctgctcgtcaggggcctatgacccggcctacctaaagtctggctcggcctaatttgtttattaaacaggttaaactcaagctttttata 52254891  T
Q  323 aagctcattattttaaataggccaggc 349  Q
    |||||||||| ||||||||||| ||||    
T  52254892 aagctcattaatttaaataggctaggc 52254918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 219 - 347
Target Start/End: Complemental strand, 54234656 - 54234529
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    ||||||||| |||| |  |||||||||||||||||||||||||||||||||| ||| ||||   ||||||  || |||||||||||  ||||||||||||    
T  54234656 tgggaatagaccagaccacccgtcaggggcctatgacccggcctacttaaagctcgactcgatgtagctcattttttaaataggtttagctcaagctttt 54234557  T
Q  319 taaaaagctcattattttaaataggccag 347  Q
    ||||||||||||||  |||||||||||||    
T  54234556 taaaaagctcatta-attaaataggccag 54234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 239 - 359
Target Start/End: Original strand, 1180086 - 1180206
Alignment:
Q  239 cgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaa 338  Q
    ||||||||| |||||| ||| |||||||||||| |  ||||  ||| |||| ||||||||||||| || |||||||||||||||||| |||||| |||||    
T  1180086 cgtcaggggtctatgaaccgccctacttaaagtccaactcgatctaactcgtttattaaataggtaatactcaagctttttaaaaagttcattaatttaa 1180185  T
Q  339 ataggccaggctaatgcttat 359  Q
    |||||| || |||| ||||||    
T  1180186 ataggctagactaaggcttat 1180206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 359
Target Start/End: Original strand, 5382210 - 5382326
Alignment:
Q  245 gggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagct--cattattttaaatag 342  Q
    ||||||||||||  ||||| |||||| ||||||||||||| |||| || ||||||| |||| |||||||||||||||||| ||  | ||| |||||||||    
T  5382210 gggcctatgaccgagcctatttaaagctcggctcggcctaactcgtttgttaaataagttaggctcaagctttttaaaaaactcgcgttaatttaaatag 5382309  T
Q  343 gccaggctaatgcttat 359  Q
    || ||| ||| ||||||    
T  5382310 gctaggttaaggcttat 5382326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 13610822 - 13610943
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||| ||||||||||  |||||||||||||| ||||||||||| |||| ||||| || |||| |||| ||| ||||||||| |  |   |||||||    
T  13610822 tgggaataagccaggctgcttgtcaggggcctatggcccggcctactaaaagctcggcccgacctaactcgtttaataaataggtcaaacatgagctttt 13610921  T
Q  319 taaaaagctcattattttaaat 340  Q
    ||||||||| |||| |||||||    
T  13610922 taaaaagcttattaatttaaat 13610943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 357
Target Start/End: Original strand, 33880850 - 33880951
Alignment:
Q  256 ccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaatgc 355  Q
    |||||||||||||||   |  |||||||| |||| |||||||||| |||| |||||| |||||||||||||||||||||| |||||||  ||||||| ||    
T  33880850 ccggcctacttaaagcctgattcggcctaactcgtttattaaatatgttaggctcaaactttttaaaaagctcattatttaaaataggttaggctaacgc 33880949  T
Q  356 tt 357  Q
    ||    
T  33880950 tt 33880951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 361
Target Start/End: Complemental strand, 34458779 - 34458637
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||| ||||| || ||||||||||||||| | ||||||| | ||||||||| |||||||| |||| ||| ||||| ||| |  ||  |||||||    
T  34458779 tgggaataggtcaggccgctcgtcaggggcctatggctcggcctagtaaaagttcgggtcggcctaactcgtttaataaatgggtcaaacttgagctttt 34458680  T
Q  319 taaaaagctcattattttaaataggccaggctaatgcttatca 361  Q
    |||| |||  |||| ||||| ||| ||||||| | ||||||||    
T  34458679 taaagagcctattaatttaattagtccaggcttaagcttatca 34458637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 47681622 - 47681762
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    ||||| ||||||| || || ||||| ||||||||||  ||||||||| ||||| ||||||||||||||||| ||| ||||| ||| | |||  || ||||    
T  47681622 tgggagtaggccaagccgctcgtcaagggcctatgattcggcctactaaaagtccggctcggcctagctcgtttaataaatgggtcaagcttgagatttt 47681721  T
Q  319 taaaaagctcattattttaaataggccaggctaatgcttat 359  Q
    |||||||   |||| ||||| |||| |||||| | ||||||    
T  47681722 taaaaagtctattaatttaattaggtcaggcttaggcttat 47681762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 350
Target Start/End: Original strand, 43137085 - 43137216
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||||||||  ||  |||||||||||||| | ||||||| | |||   ||||||||||||||||| ||| |||||  || | |||  |||||||    
T  43137085 tgggaataggccaggtcgcttgtcaggggcctatggctcggcctattgaaaacccggctcggcctagctcgtttaataaatgtgtcaagcttgagctttt 43137184  T
Q  319 taaaaagctcattattttaaataggccaggct 350  Q
    |||||| |  |||| ||||| |||||||||||    
T  43137185 taaaaaccctattaatttaattaggccaggct 43137216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 35452022 - 35452092
Alignment:
Q  265 ttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattt 335  Q
    |||||||| || |||||||| |||| ||||||||||| |||  ||||| ||||||||||||||||| ||||    
T  35452022 ttaaagtttggttcggcctaactcgtttattaaatagattagactcaaactttttaaaaagctcataattt 35452092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 15521859 - 15521755
Alignment:
Q  239 cgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaa 338  Q
    ||||||||||||||||| | ||||||| ||||| ||||||| |||| || | ||| ||||| |||||  ||  |||||||||||||||  |||| |||||    
T  15521859 cgtcaggggcctatgactcagcctactaaaagtccggctcgacctaacttgtttaataaatgggttaaacttgagctttttaaaaagcctattaatttaa 15521760  T
Q  339 atagg 343  Q
     ||||    
T  15521759 ttagg 15521755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 348
Target Start/End: Complemental strand, 21680649 - 21680562
Alignment:
Q  260 cctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccagg 348  Q
    |||||||||||| || |||||||||| ||  |||||| |||||||| | |||||| ||||||||| || |||| |||||||||| ||||    
T  21680649 cctacttaaagtccgactcggcctagttcttttattatataggttaggatcaagc-ttttaaaaaacttattaatttaaataggtcagg 21680562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 40711687 - 40711747
Alignment:
Q  299 taggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaatgcttat 359  Q
    ||||||| | ||||| |||||||||| || ||||||||||||||| |||| ||||||||||    
T  40711687 taggttaggttcaagttttttaaaaaactaattattttaaataggtcaggttaatgcttat 40711747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 215 - 340
Target Start/End: Complemental strand, 30618279 - 30618154
Alignment:
Q  215 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 314  Q
    |||||||||||||||||| | ||||||| |||||||||| | |||||||||||||| || ||| ||||||||||  ||||||||||||||| ||||||||    
T  30618279 gggatgggaataggccagaccgcccgtccggggcctatggcacggcctacttaaagctcagctaggcctagctcatttattaaataggttaggctcaagc 30618180  T
Q  315 tttttaaaaagctcattattttaaat 340  Q
    ||||||||||||| |||| |||||||    
T  30618179 tttttaaaaagcttattaatttaaat 30618154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 351
Target Start/End: Complemental strand, 19090428 - 19090296
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||| ||||| |  | |||| ||||||||||||  |||||||||||  ||||||||| ||||||| ||||||||||||| | ||||||||||||    
T  19090428 tgggaataggtcaggccgttcctcagaggcctatgacccaacctacttaaagcccggctcggcgtagctcgtttattaaataggtaaggctcaagctttt 19090329  T
Q  319 taaaaagctcattattttaaataggccaggcta 351  Q
    ||||||| |||||| ||||||||||| ||||||    
T  19090328 taaaaagttcattaatttaaataggctaggcta 19090296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 17914021 - 17913881
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    ||||||||||| |||| || | ||||| |||||||||||  | ||||||||| ||||||||||||| |||  ||||||||||||| |  |||||||||||    
T  17914021 tgggaataggcgaggccgctcttcaggagcctatgacccaacgtacttaaagctcggctcggcctaactcctttattaaataggtaagactcaagctttt 17913922  T
Q  319 taaaaagctcattattttaaataggccaggctaatgcttat 359  Q
    ||||||| | |||| ||||||||||| ||| ||| ||||||    
T  17913921 taaaaagtttattaatttaaataggctaggttaaggcttat 17913881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 359
Target Start/End: Original strand, 30378310 - 30378429
Alignment:
Q  239 cgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaa 338  Q
    ||||||||| |||||| ||||||||||||||| |||||||||||||  |||  ||||||||| ||||  ||||||| ||||||||||||||||| |||||    
T  30378310 cgtcaggggtctatgatccggcctacttaaagctcggctcggcctaattcgtatattaaataagttagactcaagc-ttttaaaaagctcattaatttaa 30378408  T
Q  339 ataggccaggctaatgcttat 359  Q
    |||||| ||| ||| ||||||    
T  30378409 ataggctaggataaggcttat 30378429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 345
Target Start/End: Complemental strand, 34640624 - 34640498
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||||||| | |||||||||||||||||| | ||||||||| ||||  ||||||| ||||||||| ||| |||||| || |  ||  |||||||    
T  34640624 tgggaataggccagaccgcccgtcaggggcctatggctcggcctactaaaagcccggctcgacctagctcgattaataaataagtcaaacttgagctttt 34640525  T
Q  319 taaaaagctcattattttaaataggcc 345  Q
    ||||||||  |||| ||||||||||||    
T  34640524 taaaaagcctattaatttaaataggcc 34640498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 41533370 - 41533498
Alignment:
Q  215 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 314  Q
    |||||| ||||||| ||| | | |||||||||| |||||   | ||||||| ||||||||||||||||||| ||| ||| ||||||||  | |||  |||    
T  41533370 gggatgagaataggtcagaccgtccgtcaggggtctatggttcagcctactaaaagttcggctcggcctagatcgtttaataaataggccaagcttgagc 41533469  T
Q  315 tttttaaaaagctcattattttaaatagg 343  Q
    ||||||||||||| |||| ||||||||||    
T  41533470 tttttaaaaagcttattaatttaaatagg 41533498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 5306197 - 5306088
Alignment:
Q  215 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 314  Q
    |||||||||||||||||||| || ||||||||||||||| |||| |||||| |||| ||| | || ||||||||| ||| |||| |||| | ||   |||    
T  5306197 gggatgggaataggccaggccgctcgtcaggggcctatggcccgacctactgaaagctcgacccgacctagctcgtttaataaaaaggtcaagcatgagc 5306098  T
Q  315 tttttaaaaa 324  Q
    ||||||||||    
T  5306097 tttttaaaaa 5306088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 352
Target Start/End: Complemental strand, 15609848 - 15609735
Alignment:
Q  239 cgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaa 338  Q
    ||||||||| ||||| |||| |||||||||||  | | |||||||  |||   |||||||||||||| |||||||||||||||||||| || || |||||    
T  15609848 cgtcaggggtctatgtcccgacctacttaaaggccagttcggccttactcatctattaaataggttaggctcaagctttttaaaaagcacaataatttaa 15609749  T
Q  339 ataggccaggctaa 352  Q
    ||||| ||| ||||    
T  15609748 ataggtcagtctaa 15609735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 38120103 - 38119996
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    ||||||||| ||||||||| | ||| ||||||||| | |||| |||  ||||| |||||||||||||| |  ||| ||||| ||| | |||  |||||||    
T  38120103 tgggaatagaccaggctgctcatcatgggcctatggctcggcttacaaaaagtccggctcggcctagcccatttaataaatgggtcaagcttgagctttt 38120004  T
Q  319 taaaaagc 326  Q
    ||||||||    
T  38120003 taaaaagc 38119996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 13293540 - 13293629
Alignment:
Q  250 tatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaa 339  Q
    ||||||||| |||||||||| | || ||| | |||  | | ||||||||||| ||| | |||| ||||||||||||||||||| ||||||    
T  13293540 tatgacccgtcctacttaaaatccgactcagtctaatttgtttattaaatagattagggtcaaactttttaaaaagctcattaatttaaa 13293629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 35342 - 35207
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||||||||| || | ||||||||||||||| |  |||||||||||     | |||||||||| | ||||||||||||||| ||||||||||||    
T  35342 tgggaataggccaggccgctcatcaggggcctatgactctacctacttaaag-----cccggcctagcttgtttattaaataggttaggctcaagctttt 35248  T
Q  319 taaaaagctcattattttaaataggccaggctaatgcttat 359  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  35247 taaaaagctcattaatttaaataggctaggctaatgcttat 35207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 222 - 359
Target Start/End: Complemental strand, 28283777 - 28283642
Alignment:
Q  222 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaa 321  Q
    ||||||||||||| ||  |||||||| ||||||||| || |||||||||  ||||||||||||||||| ||||||||||||| | ||||||| |||||||    
T  28283777 gaataggccaggccgc--gtcaggggtctatgacccagcttacttaaagcccggctcggcctagctcgtttattaaataggtaaggctcaagttttttaa 28283680  T
Q  322 aaagctcattattttaaataggccaggctaatgcttat 359  Q
    |||| |||||  ||||||||||| ||||||| ||||||    
T  28283679 aaagttcatttatttaaataggctaggctaaggcttat 28283642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 350
Target Start/End: Original strand, 34582985 - 34583116
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||||||||| |||||||||| ||||||| | ||||||||| |||| ||||||||||||| |||| ||| | |||  || | |||  |||||||    
T  34582985 tgggaataggccaggccgcccgtcaggagcctatggctcggcctactaaaagctcggctcggcctaactcgtttaatcaatgagtcaagcttgagctttt 34583084  T
Q  319 taaaaagctcattattttaaataggccaggct 350  Q
    ||||||||  |||| ||||| |||||| ||||    
T  34583085 taaaaagcctattaatttaattaggccgggct 34583116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 29454623 - 29454739
Alignment:
Q  222 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaa 321  Q
    ||||||||||| |   |||||||||  ||||| ||||| |||||||||| |||||||| |||| |||| |||||||| ||||||  || ||| |||||||    
T  29454623 gaataggccagaccatccgtcagggatctatggcccggtctacttaaagctcggctcgacctaactcgtttattaaacaggttagacttaagatttttaa 29454722  T
Q  322 aaagctcattattttaa 338  Q
    ||||||||||| |||||    
T  29454723 aaagctcattaatttaa 29454739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 351
Target Start/End: Original strand, 5862688 - 5862820
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||| ||| |  ||||||||||  ||||| | || ||||||||||||||  ||| ||||| |||| |||||||||| |||| | |||  ||| |    
T  5862688 tgggaataggtcagaccacccgtcagggatctatgccgcgacctacttaaagttctactcagcctaactcgtttattaaatatgttaggttcagacttgt 5862787  T
Q  319 taaaaagctcattattttaaataggccaggcta 351  Q
    |||||||||||||| |||||||| | |||||||    
T  5862788 taaaaagctcattaatttaaataagtcaggcta 5862820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 347
Target Start/End: Original strand, 40896994 - 40897122
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||| |||| ||| ||||||||||||||| | || |||||| |||| |||| ||||||||| ||| ||| ||||| ||| |  || ||||||||    
T  40896994 tgggaataggtcaggttgctcgtcaggggcctatggctcgacctactaaaagctcggttcggcctagttcgtttaataaatgggtcaaacttaagctttt 40897093  T
Q  319 taaaaagctcattattttaaataggccag 347  Q
    |||||| ||  ||| ||||| ||||||||    
T  40897094 taaaaatcttgttaatttaattaggccag 40897122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 326
Target Start/End: Complemental strand, 10542458 - 10542347
Alignment:
Q  215 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 314  Q
    |||||| ||||||||||| | || | ||||||||||||| | ||||||| | |||  |||||||||| || |||| ||| ||||| ||| | |||  |||    
T  10542458 gggatgagaataggccagaccgctcatcaggggcctatggctcggcctattaaaaactcggctcggcttaactcgtttaataaatgggtcaagcttgagc 10542359  T
Q  315 tttttaaaaagc 326  Q
    ||||||||||||    
T  10542358 tttttaaaaagc 10542347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 359
Target Start/End: Original strand, 16719652 - 16719787
Alignment:
Q  224 ataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaa 323  Q
    ||||| ||||||| || |||| |||||||| | ||||||||| |||||  ||||| ||||| |||| ||| |||||  || | |||  ||||||||||||    
T  16719652 ataggtcaggctgtccatcagaggcctatggctcggcctactaaaagtctggctcagcctaactcgtttaataaatgagtcaagcttgagctttttaaaa 16719751  T
Q  324 agctcattattttaaataggccaggctaatgcttat 359  Q
    |||  |||| ||||| |||||| |||| | ||||||    
T  16719752 agcctattaatttaattaggccgggcttaggcttat 16719787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 37508969 - 37509014
Alignment:
Q  307 gctcaagctttttaaaaagctcattattttaaataggccaggctaa 352  Q
    |||||| |||||||||||| || ||| |||||||||||||||||||    
T  37508969 gctcaaactttttaaaaagttcgttaatttaaataggccaggctaa 37509014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 1669680 - 1669756
Alignment:
Q  281 cctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaatgctt 357  Q
    ||||| ||| ||||||||||| ||| | || |||||||| |||||||||||| || |||||||| ||| ||| ||||    
T  1669680 cctagttcgtttattaaatagattaggttccagcttttttaaaagctcattaattgaaataggctaggttaaggctt 1669756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 343
Target Start/End: Complemental strand, 13582794 - 13582670
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||||||||||||||||||||  ||||||||||||  |||||||| || | ||||||||| |||||| |||||| |||||||| |||||| ||||     
T  13582794 tgggaataggccaggctgcccgtcaatggcctatgacccaacctacttagagattggctcggcccagctcgtttattatataggttaggctcaaacttta 13582695  T
Q  319 taaaaagctcattattttaaatagg 343  Q
      |||| ||||||| ||||| ||||    
T  13582694 acaaaatctcattaatttaattagg 13582670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 338
Target Start/End: Complemental strand, 42281318 - 42281202
Alignment:
Q  222 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaa 321  Q
    |||||| |||||| || |||||||||||||||||| | |||||||||||| ||||||||| || |||  || |||||||||| |  ||||||||||||||    
T  42281318 gaatagaccaggccgctcgtcaggggcctatgacctgacctacttaaagtccggctcggcttaactcatttgttaaataggtaagactcaagctttttaa 42281219  T
Q  322 aaagctcattattttaa 338  Q
    |||| |||||| |||||    
T  42281218 aaagttcattaatttaa 42281202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 359
Target Start/End: Original strand, 29909273 - 29909410
Alignment:
Q  222 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaa 321  Q
    ||||||||||||| || ||||||||| |||||| |||||||||| |||||  | ||||||||| |||| ||| ||||||||| | ||   ||||||||||    
T  29909273 gaataggccaggccgctcgtcaggggtctatgatccggcctactaaaagtctgactcggcctaactcgtttaataaataggtcaagcatgagctttttaa 29909372  T
Q  322 aaagctcattattttaaataggccaggctaatgcttat 359  Q
    ||| |  |||| ||||||| ||| ||||| | ||||||    
T  29909373 aaatcctattaatttaaatgggctaggcttaggcttat 29909410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 16576756 - 16576676
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaat 299  Q
    |||||||||||||||  |||||||||||||||||| | ||||||||| ||||  | |||| ||||| |||| ||| |||||    
T  16576756 tgggaataggccaggtcgcccgtcaggggcctatggctcggcctactaaaagccccgctcagcctaactcgtttaataaat 16576676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 320
Target Start/End: Original strand, 33075279 - 33075371
Alignment:
Q  228 gccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagcttttta 320  Q
    ||||||||| ||| ||||||||||||||   |||||||||||||   |||||| | |||||  ||| |||| |||| | ||||||||||||||    
T  33075279 gccaggctgaccgacaggggcctatgacttagcctacttaaagtctagctcggtccagctcatttaataaaaaggtcaggctcaagcttttta 33075371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 12218746 - 12218636
Alignment:
Q  215 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 314  Q
    |||||||||||||||||||| |||||||||||||||||| | || |||||| |||| ||||||||||||| |||| ||| |||||  || |  || ||||    
T  12218746 gggatgggaataggccaggccgcccgtcaggggcctatggctcgacctactaaaagctcggctcggcctatctcgtttaataaatgagtcaaacttaagc 12218647  T
Q  315 tttttaaaaag 325  Q
    |||||||||||    
T  12218646 tttttaaaaag 12218636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 359
Target Start/End: Complemental strand, 35224874 - 35224760
Alignment:
Q  246 ggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc-tttttaaaaagctcattattttaaataggc 344  Q
    |||||||| |||| ||||||||||| || |||| ||||| |||| ||||||||||||||| |||||| | ||||| |||| ||||||| ||||||||||     
T  35224874 ggcctatggcccgacctacttaaagctcagctcagcctaactcgtttattaaataggttaggctcaaactttttttaaaaactcattaatttaaataggt 35224775  T
Q  345 caggctaatgcttat 359  Q
    |||| ||| ||||||    
T  35224774 caggttaaggcttat 35224760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 340
Target Start/End: Complemental strand, 9626424 - 9626303
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 318  Q
    |||||||| ||||||||||  |||||||||||||| ||||||||||| |||| ||||| || |||| |||| ||| ||||||||| |  |   |||||||    
T  9626424 tgggaataagccaggctgcttgtcaggggcctatggcccggcctactaaaagctcggcccgacctaactcgtttaataaataggtcaaacatgagctttt 9626325  T
Q  319 taaaaagctcattattttaaat 340  Q
    ||||||||| |||| |||||||    
T  9626324 taaaaagcttattaatttaaat 9626303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 32521128 - 32521219
Alignment:
Q  261 ctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaa 352  Q
    |||||||||||   |||||||||| |||  ||||||||||||||   ||||| ||||||||||||||||||| |||| ||||| ||| ||||    
T  32521128 ctacttaaagtctagctcggcctatctcttttattaaataggtttgactcaaactttttaaaaagctcattaatttagataggtcagactaa 32521219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 5738542 - 5738622
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaat 299  Q
    |||||||||||||||| || ||||||||||||||| |  |||||||| ||||||| |||| | ||| |||| ||| |||||    
T  5738542 tgggaataggccaggccgctcgtcaggggcctatggcttggcctactaaaagttcagctcagtctaactcgtttaataaat 5738622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 343
Target Start/End: Complemental strand, 9823710 - 9823582
Alignment:
Q  215 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 314  Q
    ||||||| |||||| |||| || || || | ||||||||  | ||| |||||||||| || ||| | |||| ||| |||||||||||||||  ||||| |    
T  9823710 gggatggaaataggtcaggttgtccatcggaggcctatggtcgggcttacttaaagtccgactccgtctagatcgtttattaaataggttagactcaatc 9823611  T
Q  315 tttttaaaaagctcattattttaaatagg 343  Q
    ||||||||||   ||||| ||||||||||    
T  9823610 tttttaaaaactacattaatttaaatagg 9823582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 343
Target Start/End: Complemental strand, 10725635 - 10725507
Alignment:
Q  215 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 314  Q
    ||||||| |||||| |||| || || || | ||||||||  | ||| |||||||||| || ||| | |||| ||| |||||||||||||||  ||||| |    
T  10725635 gggatggaaataggtcaggttgtccatcggaggcctatggtcgggcttacttaaagtccgactccgtctagatcgtttattaaataggttagactcaatc 10725536  T
Q  315 tttttaaaaagctcattattttaaatagg 343  Q
    ||||||||||   ||||| ||||||||||    
T  10725535 tttttaaaaactacattaatttaaatagg 10725507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 26425876 - 26425756
Alignment:
Q  239 cgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaa 338  Q
    ||||||||| |||||  |||||||||| |||| ||||   |||||| |||| ||| |||| |||| | ||   ||||||||||||||||  ||| |||||    
T  26425876 cgtcaggggtctatggtccggcctactgaaagctcggtctggcctaactcgtttaataaaaaggtcaagcattagctttttaaaaagcttgttaatttaa 26425777  T
Q  339 ataggccaggctaatgcttat 359  Q
    || ||||||||| | ||||||    
T  26425776 atgggccaggcttaagcttat 26425756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 16166202 - 16166270
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagct 287  Q
    |||||||||||||||| |||||||||||||||||| | ||||||||| |||| ||||||||||||||||    
T  16166202 tgggaataggccaggccgcccgtcaggggcctatggctcggcctactaaaagctcggctcggcctagct 16166270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 343
Target Start/End: Complemental strand, 14265925 - 14265804
Alignment:
Q  222 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaa 321  Q
    ||||||| |||||||||| ||| ||| ||||| |||  |||||||| |   |||||||  ||| |||| || ||||||||||||  ||||||||||||||    
T  14265925 gaataggtcaggctgcccatcaagggtctatggcccaacctacttacaacacggctcgatctaactcgtttgttaaataggttagactcaagctttttaa 14265826  T
Q  322 aaagctcattattttaaatagg 343  Q
    |||||||||||  |||||||||    
T  14265825 aaagctcattaacttaaatagg 14265804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 17314488 - 17314404
Alignment:
Q  240 gtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaa 324  Q
    |||||||| ||||| |||| |||||||||||  | | ||||||||||||| |||||||||| ||||  |||||||||||||||||    
T  17314488 gtcaggggtctatggcccgacctacttaaagcgcagttcggcctagctcgtttattaaatatgttagactcaagctttttaaaaa 17314404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 6138558 - 6138642
Alignment:
Q  219 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggt 303  Q
    |||||||||| ||||| |  |||||||||||||||| |||||||||| |||| ||||   |||||| |||| ||| |||||||||    
T  6138558 tgggaataggtcaggccgttcgtcaggggcctatgatccggcctactaaaagctcggtctggcctaactcgtttaataaataggt 6138642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 357
Target Start/End: Complemental strand, 4450773 - 4450678
Alignment:
Q  262 tacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaatgctt 357  Q
    |||||||||||||||| | |||| ||   |||||||||||||||  || || |||||||||||| || ||| ||||||| ||| ||||||| ||||    
T  4450773 tacttaaagttcggcttgtcctatcttttttattaaataggttaaactaaaactttttaaaaagttcgttaatttaaattggcaaggctaaggctt 4450678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 359
Target Start/End: Original strand, 1200 - 1335
Alignment:
Q  223 aataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaa 322  Q
    ||||||||||||  |||||||||| | |||| ||||| |||||||||| | |  | | |||| |||| |||||||||| ||   ||||||||||||||||    
T  1200 aataggccaggcctcccgtcaggg-cttatggcccggtctacttaaagcttgatttgacctaactcgtttattaaatatgtctggctcaagctttttaaa 1298  T
Q  323 aagctcattattttaaataggccaggctaatgcttat 359  Q
    || ||||||| ||||||| || |||||| | ||||||    
T  1299 aaactcattaatttaaattggtcaggcttaagcttat 1335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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