View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5772_low_4 (Length: 387)
Name: NF5772_low_4
Description: NF5772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5772_low_4 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 144 - 371
Target Start/End: Complemental strand, 9804273 - 9804036
Alignment:
| Q |
144 |
ctatatgtgtcgtctttagttcaagtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgc |
243 |
Q |
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| T |
9804273 |
ctatatgtgtcgtctttagttcaagtagcaaggattcttatttgcaggatgtatctgaaatgcaaggtagtggaggtatttctctgccaacaagttctgc |
9804174 |
T |
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| Q |
244 |
agcagaaaagggaagaacttttactccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaag- |
342 |
Q |
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| T |
9804173 |
agcagaaaagcgaagaacttttactccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaagg |
9804074 |
T |
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| Q |
343 |
---------aatgtgtaagcaaaattcatggtgataag |
371 |
Q |
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| T |
9804073 |
ctcaaatgaaatgtgtaagcaaaattcatggtgataag |
9804036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 168 - 342
Target Start/End: Complemental strand, 9814003 - 9813828
Alignment:
| Q |
168 |
gtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaaggg-aagaactttta |
266 |
Q |
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| T |
9814003 |
gtagcaaggattcttatttgcaagatgtatctgatatgcaaggtagtggaagtatttctctgtcaacaaattctgcagcagaaaagggaaagaattttta |
9813904 |
T |
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| Q |
267 |
ctccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaag |
342 |
Q |
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| T |
9813903 |
ctccaattaggatcaaatcaatgacgaaaaatctgattttataaggaggaagaaagtgagtaggctccgtctcaag |
9813828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 9817006 - 9816909
Alignment:
| Q |
14 |
ttgtttcataattacactatacgtatcacttatacactattgtttttt-ataagtaatttttctgaatatgcaaatttgacttagtattgtcatacat |
110 |
Q |
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| T |
9817006 |
ttgttgcataattacactatacgtatcacttatatactattgtttttttataagtcatttttctgaatatgcaaatttgacttagtattgtcatacat |
9816909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 9829294 - 9829154
Alignment:
| Q |
167 |
agtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaaggg-aagaactttt |
265 |
Q |
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| T |
9829294 |
agtaacaagaattctaattttcaagatgtatctgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgt |
9829195 |
T |
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| Q |
266 |
actccaattatgatcaaaacaatgaggaaatttctgatttt |
306 |
Q |
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| T |
9829194 |
actccaattatgatcaaagcaacgaggaagattctgatttt |
9829154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 9804373 - 9804307
Alignment:
| Q |
36 |
gtatcacttatacactattgttttttataagtaatttttctgaatatgcaaatttgacttagtattgtcatacat |
110 |
Q |
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| T |
9804373 |
gtatcacttatacactattgttttttataagtc--------gaatatgcaaatttgacttagtattgtcatacat |
9804307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 306
Target Start/End: Complemental strand, 9755830 - 9755702
Alignment:
| Q |
179 |
tcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaagggaa-gaacttttactccaattatg |
277 |
Q |
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| T |
9755830 |
tcttattttcaagatgtgtctgatatgcaaggcagtgaatatatttctcagtcaacatgttctgcaacaaaaaagggaaagaatttgtactccaattatg |
9755731 |
T |
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| Q |
278 |
atcaaaacaatgaggaaatttctgatttt |
306 |
Q |
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| T |
9755730 |
atcaaagcagtgaggaagattctgatttt |
9755702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 11142 - 11046
Alignment:
| Q |
14 |
ttgtttcataattacactatacgtatcacttatacactattgttttttataagtaatttttctgaatatgcaaatttgacttagtattgtcatacat |
110 |
Q |
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| T |
11142 |
ttgtttcataattacactccacgtatcagttatacaatatttttttttataagtcatttttctaaataagcaaatttgacttggtattgtcatacat |
11046 |
T |
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