View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5772_low_5 (Length: 380)
Name: NF5772_low_5
Description: NF5772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5772_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 36798847 - 36799218
Alignment:
| Q |
1 |
atttaaacatgcatatatgtattttatgcatgtactttagttaaggcctttgatgctgaaatgaacatgatattcaattgcagtcatgcttacatgtcaa |
100 |
Q |
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| T |
36798847 |
atttaaacatgcatatatgtattttatgcatgtactttagttaaggcctttgatgctgaaatgaacatgatattcaattgcagtcatgcttacatgtcaa |
36798946 |
T |
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| Q |
101 |
tcgctctcacaaagtcatgtccatcacattcacattaaaattaataacaaataacatgctgca-----nnnnnnnnnnaacggaaataacatgcatgtan |
195 |
Q |
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| T |
36798947 |
tcgctctcacaaagtcatgtccatcacattcacattaaaattaataacaaataacatgctgcatttttttttttttttaacggaaataacatgcatgtat |
36799046 |
T |
|
| Q |
196 |
nnnnnnaaataaaaagtttggacaaatttaaaattttctaaacagttcatcatgagatgtaatttattaatcaattgagttcaatcctttgatttgaaat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36799047 |
ttttttaaataaaaagtttggacaaatttaaaattttctaaacagttcatcatgagatgtaatttattaatcaattgagttcaatcctttgatttgaaat |
36799146 |
T |
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| Q |
296 |
gcatatttgtgtt----nnnnnnnnntcatttcaagaaattatagatcgaaagttagaaattacccaatgct |
363 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36799147 |
gcatatttgtgttaaaaaaataaaaatcatttcaagaaattatagatcgaaagttagaaattacccaatgct |
36799218 |
T |
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