View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5772_low_7 (Length: 354)

Name: NF5772_low_7
Description: NF5772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5772_low_7
NF5772_low_7
[»] chr4 (3 HSPs)
chr4 (1-227)||(44302342-44302568)
chr4 (117-194)||(42576917-42576994)
chr4 (274-336)||(44302233-44302295)
[»] chr5 (4 HSPs)
chr5 (119-197)||(28601930-28602008)
chr5 (137-196)||(32147125-32147184)
chr5 (166-198)||(12895033-12895065)
chr5 (166-202)||(15898311-15898347)
[»] chr8 (3 HSPs)
chr8 (118-195)||(15196499-15196576)
chr8 (161-194)||(36309454-36309487)
chr8 (118-194)||(38125584-38125660)
[»] chr2 (3 HSPs)
chr2 (119-196)||(36887319-36887396)
chr2 (161-197)||(12890262-12890298)
chr2 (168-196)||(19246531-19246559)
[»] scaffold0009 (1 HSPs)
scaffold0009 (118-194)||(143350-143426)
[»] chr7 (1 HSPs)
chr7 (119-194)||(19989079-19989154)
[»] chr1 (2 HSPs)
chr1 (144-195)||(59660-59711)
chr1 (162-194)||(32152117-32152149)
[»] chr3 (1 HSPs)
chr3 (144-194)||(25124720-25124770)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 44302568 - 44302342
Alignment:
Q  1 ccatttccattaagtgaaaacaaagctttgaaatgtgggtgaaattccttcgtttaatatttttattttaatctagtttttaaagaatgataaaattgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||    
T  44302568 ccatttccattaagtgaaaacaaagctttgaaatgtgggtgaaattccttcgtttaatatttttactttaaacttgtttttaaagaatgataaaattgta 44302469  T
Q  101 aaggatttagataagagatacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagtataattg 200  Q
    |||||||||||||||||||||||||||||||| || || ||| |||| ||||||||||| |||||||||||||||||||  |||||||| ||||||||||    
T  44302468 aaggatttagataagagatacttcctccgttcttatatttaagcacccttttattagaggaaaaagatgcttagatatagagacggaggaagtataattg 44302369  T
Q  201 aagaagaaaagttataccaaactcaga 227  Q
    ||||| |||||||||||||||||||||    
T  44302368 aagaaaaaaagttataccaaactcaga 44302342  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 42576994 - 42576917
Alignment:
Q  117 gatacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagta 194  Q
    |||||| ||||||||| || |||||| ||||||||||||||||  |||   |||||| ||||||| ||||||||||||    
T  42576994 gatactccctccgttcctatatctaagcaccattttattagaggcaaattgtgcttatatataagaacggagggagta 42576917  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 44302295 - 44302233
Alignment:
Q  274 gcttaaagtgaatcgagatcttgannnnnnnaggtaaaaatgaaaagaagctattcctaattc 336  Q
    ||||||||||||| ||||||||||       ||||||||||| ||||||||||||||||||||    
T  44302295 gcttaaagtgaattgagatcttgatttttttaggtaaaaatgtaaagaagctattcctaattc 44302233  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 28601930 - 28602008
Alignment:
Q  119 tacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagtataa 197  Q
    |||||||||||||| || |||||| |||| |||||||||||| ||| | |||||| |||| ||||| ||||||||||||    
T  28601930 tacttcctccgttcttatatctaagcacccttttattagagataaatggtgcttatatatcaggacagagggagtataa 28602008  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 32147125 - 32147184
Alignment:
Q  137 atctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagtata 196  Q
    |||||||||||||||||||||||  ||| |||||||| |||||| || |||| |||||||    
T  32147125 atctaaacaccattttattagaggcaaatgatgcttacatataaagatggagagagtata 32147184  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 12895065 - 12895033
Alignment:
Q  166 gatgcttagatataaggacggagggagtataat 198  Q
    |||||||||||||| ||||||||||||||||||    
T  12895065 gatgcttagatatagggacggagggagtataat 12895033  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 15898347 - 15898311
Alignment:
Q  166 gatgcttagatataaggacggagggagtataattgaa 202  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  15898347 gatgcttagatatagggacggagggagtataagtgaa 15898311  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 15196576 - 15196499
Alignment:
Q  118 atacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagtat 195  Q
    ||||| ||||||| | || |||||| |||| ||||||||||  ||||||||||||| ||||| |||||||||||||||    
T  15196576 atactccctccgtccctatatctaagcacccttttattagaagaaaaagatgcttacatatagggacggagggagtat 15196499  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 36309487 - 36309454
Alignment:
Q  161 aaaaagatgcttagatataaggacggagggagta 194  Q
    ||||||||||||||||||||||||| ||||||||    
T  36309487 aaaaagatgcttagatataaggacgaagggagta 36309454  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 38125660 - 38125584
Alignment:
Q  118 atacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagta 194  Q
    ||||| ||||||| | || || ||| |||| |||||||||||  ||||| |||||| ||||| ||||||||||||||    
T  38125660 atactccctccgtccctatatgtaagcacccttttattagaggcaaaaggtgcttacatatatggacggagggagta 38125584  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 36887396 - 36887319
Alignment:
Q  119 tacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagtata 196  Q
    |||| ||||||| | || || ||||||||||||||||| || ||||| ||||||| |||||  |||||||||||||||    
T  36887396 tactccctccgtccctatatgtaaacaccattttattataggaaaaaaatgcttacatatatagacggagggagtata 36887319  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 12890298 - 12890262
Alignment:
Q  161 aaaaagatgcttagatataaggacggagggagtataa 197  Q
    |||| |||||||||||||| |||||||||||||||||    
T  12890298 aaaaggatgcttagatatagggacggagggagtataa 12890262  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 19246531 - 19246559
Alignment:
Q  168 tgcttagatataaggacggagggagtata 196  Q
    |||||||||||||||||||||||||||||    
T  19246531 tgcttagatataaggacggagggagtata 19246559  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 143350 - 143426
Alignment:
Q  118 atacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagta 194  Q
    |||||||||| || | || || |||||||| |||||||||||  ||| |||||||| ||||| ||||||||||||||    
T  143350 atacttcctctgtccctatatgtaaacacccttttattagaggcaaaggatgcttacatatagggacggagggagta 143426  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 19989154 - 19989079
Alignment:
Q  119 tacttcctccgttcatacatctaaacaccattttattagagaaaaaagatgcttagatataaggacggagggagta 194  Q
    |||||||||||| | || |||||| ||||||||||||||||  ||| | |||||| ||||| | ||||||||||||    
T  19989154 tacttcctccgtccctatatctaagcaccattttattagaggcaaatggtgcttacatataggaacggagggagta 19989079  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 59660 - 59711
Alignment:
Q  144 caccattttattagagaaaaaagatgcttagatataaggacggagggagtat 195  Q
    ||||||||||||||||| ||| | |||||| ||||| |||||||||||||||    
T  59660 caccattttattagagataaatggtgcttatatatagggacggagggagtat 59711  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 32152149 - 32152117
Alignment:
Q  162 aaaagatgcttagatataaggacggagggagta 194  Q
    ||||| |||||||||||||||||||||||||||    
T  32152149 aaaaggtgcttagatataaggacggagggagta 32152117  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 25124720 - 25124770
Alignment:
Q  144 caccattttattagagaaaaaagatgcttagatataaggacggagggagta 194  Q
    |||| |||||||||||  ||| |||||||| ||||||||||||||||||||    
T  25124720 cacccttttattagaggtaaatgatgcttatatataaggacggagggagta 25124770  T

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