View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5773-Insertion-2 (Length: 750)

Name: NF5773-Insertion-2
Description: NF5773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5773-Insertion-2
NF5773-Insertion-2
[»] chr3 (7 HSPs)
chr3 (349-568)||(47745617-47745837)
chr3 (6-95)||(47745281-47745370)
chr3 (567-646)||(47746236-47746315)
chr3 (165-214)||(47745428-47745477)
chr3 (546-639)||(43858131-43858224)
chr3 (689-736)||(47746857-47746904)
chr3 (408-469)||(43857990-43858051)
[»] chr7 (3 HSPs)
chr7 (546-639)||(1718417-1718510)
chr7 (548-618)||(6802935-6803005)
chr7 (408-473)||(1718584-1718649)
[»] chr1 (5 HSPs)
chr1 (408-504)||(81387-81484)
chr1 (546-639)||(46269059-46269152)
chr1 (548-627)||(47671319-47671398)
chr1 (565-627)||(41159506-41159568)
chr1 (408-469)||(46268918-46268979)
[»] chr4 (3 HSPs)
chr4 (548-627)||(12376826-12376905)
chr4 (408-478)||(31182811-31182881)
chr4 (415-478)||(53480487-53480550)
[»] chr6 (1 HSPs)
chr6 (408-478)||(3533876-3533946)
[»] chr2 (1 HSPs)
chr2 (548-627)||(40368317-40368396)
[»] chr8 (1 HSPs)
chr8 (548-613)||(34180963-34181028)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 5e-64; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 349 - 568
Target Start/End: Original strand, 47745617 - 47745837
Alignment:
Q  349 taacaataattttgattatttaattgattaaatatgtttaatcaataggcttaaaaatg-ttttttgaacaaatcaaaatcgaattatattag----taa 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||    |||    
T  47745617 taacaataattttgattatttaattgattaaatatgtttaatcaataggcttaaaaatgttttttttaacaaatcaaaatggtattatattagtaattaa 47745716  T
Q  444 accaatgatgatcaccccgcacaaggtgtg-aaaagagaagcaccgaaaaaatatttacaaattaaagtcatgatgtcaataaaaaatccccacttaatc 542  Q
    ||||| ||||||||||||||| |||||||| ||||| |||||||| |||||||||||||     ||||||||||||||||||| ||| | ||||||||||    
T  47745717 accaacgatgatcaccccgcataaggtgtgcaaaagggaagcacctaaaaaatatttac-----aaagtcatgatgtcaataacaaagcaccacttaatc 47745811  T
Q  543 aaactaattacaaaataacactcata 568  Q
    ||||||||||||||| ||||| ||||    
T  47745812 aaactaattacaaaagaacacccata 47745837  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 47745281 - 47745370
Alignment:
Q  6 cactatttgagtcacaaaatcttgaaatagaatcaaaactgatatatattaaaatgaaggaccaatactctgagtaagcaaaaatagagg 95  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47745281 cactatttgagtcgcaaaatcttgaaatagaatcaaaactgatatatattaaaatgaaggaccaatactctgagtaagcaaaaatagagg 47745370  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 567 - 646
Target Start/End: Original strand, 47746236 - 47746315
Alignment:
Q  567 tacaaagaatagggcgcttccaccaatcgtggtaggaataagcaaaagtcacgtgtttagagctcaaccataagtgagaa 646  Q
    |||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47746236 tacaaagaatagggtgtttccaccaatcgttgtaggaataagcaaaagtcacgtgtttagacctcaaccataagtgagaa 47746315  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 47745428 - 47745477
Alignment:
Q  165 gagataacatcaattatttcttgcaaaaagtgtgagtacaaaaatattaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47745428 gagataacatcaattatttcttgcaaaaagtgtgagtacaaaaatattaa 47745477  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 546 - 639
Target Start/End: Original strand, 43858131 - 43858224
Alignment:
Q  546 ctaattacaaaataacactcatacaaagaatagggcgcttccaccaatcgtggtaggaataagcaaaagtcacgtgtttagagctcaaccataa 639  Q
    |||||||||| ||| ||| ||||||| |||||||| | ||||||||||| || || ||||||||||||| ||| |||||||| |||||||||||    
T  43858131 ctaattacaacatagcacccatacaatgaatagggtgtttccaccaatcatgataagaataagcaaaagccacctgtttagacctcaaccataa 43858224  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 689 - 736
Target Start/End: Original strand, 47746857 - 47746904
Alignment:
Q  689 caaacaaccgccgtctccacacccacgctctaccatcgaacccccacc 736  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  47746857 caaacaaccgccgtctccacacccacgccctaccatcgaacccccacc 47746904  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 469
Target Start/End: Original strand, 43857990 - 43858051
Alignment:
Q  408 ttttttgaacaaatcaaaatcgaattatattagtaaaccaatgatgatcaccccgcacaagg 469  Q
    |||||||||||||||||||| ||||||||||| | || |||  |||||||||| ||||||||    
T  43857990 ttttttgaacaaatcaaaatggaattatattactcaaacaacaatgatcaccctgcacaagg 43858051  T

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Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 546 - 639
Target Start/End: Complemental strand, 1718510 - 1718417
Alignment:
Q  546 ctaattacaaaataacactcatacaaagaatagggcgcttccaccaatcgtggtaggaataagcaaaagtcacgtgtttagagctcaaccataa 639  Q
    |||||||||| ||||||| ||||||| |||||||| | ||||||||||| || || |||||| |||||| ||| |||||||| |||||||||||    
T  1718510 ctaattacaacataacacccatacaatgaatagggtgtttccaccaatcatgataagaataatcaaaagccacctgtttagacctcaaccataa 1718417  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 618
Target Start/End: Complemental strand, 6803005 - 6802935
Alignment:
Q  548 aattacaaaataacactcatacaaagaatagggcgcttccaccaatcgtggtaggaataagcaaaagtcac 618  Q
    ||||||| || ||||| ||||||||||| |||| | ||||||||||||||||| |||||||||||| ||||    
T  6803005 aattacataagaacacccatacaaagaacagggtgtttccaccaatcgtggtaagaataagcaaaattcac 6802935  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 473
Target Start/End: Complemental strand, 1718649 - 1718584
Alignment:
Q  408 ttttttgaacaaatcaaaatcgaattatattagtaaaccaatgatgatcaccccgcacaaggtgtg 473  Q
    |||||||||||||||||||| ||||||||||| | || ||   |||||||||| |||||||| |||    
T  1718649 ttttttgaacaaatcaaaatggaattatattactcaaacaccaatgatcaccctgcacaaggagtg 1718584  T

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Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 408 - 504
Target Start/End: Original strand, 81387 - 81484
Alignment:
Q  408 ttttttgaacaaatcaaaatcgaattatattagtaaaccaatgatgatcaccccgcacaaggtgtg-aaaagagaagcaccgaaaaaatatttacaaa 504  Q
    |||||| ||||||||||||| ||||||||||| |||||||| |||||||||||| || ||| |||| ||||| |||||| ||  ||||||||||||||    
T  81387 tttttttaacaaatcaaaatggaattatattactaaaccaacgatgatcaccccacataagatgtgcaaaagggaagcaacgctaaaatatttacaaa 81484  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 639
Target Start/End: Original strand, 46269059 - 46269152
Alignment:
Q  546 ctaattacaaaataacactcatacaaagaatagggcgcttccaccaatcgtggtaggaataagcaaaagtcacgtgtttagagctcaaccataa 639  Q
    |||| ||||| ||| ||| ||||||| |||||||| | ||||||||||| || || ||||||||||||| ||| |||||||| |||||||||||    
T  46269059 ctaaatacaacatagcacccatacaatgaatagggtgtttccaccaatcatgataagaataagcaaaagccacctgtttagatctcaaccataa 46269152  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 548 - 627
Target Start/End: Complemental strand, 47671398 - 47671319
Alignment:
Q  548 aattacaaaataacactcatacaaagaatagggcgcttccaccaatcgtggtaggaataagcaaaagtcacgtgtttaga 627  Q
    ||||||| || ||||| ||||||||||| |||| | ||||||||||||||||| |||||| ||||| || | ||||||||    
T  47671398 aattacataagaacacccatacaaagaacagggtgtttccaccaatcgtggtaagaataaacaaaattcgcctgtttaga 47671319  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 627
Target Start/End: Complemental strand, 41159568 - 41159506
Alignment:
Q  565 catacaaagaatagggcgcttccaccaatcgtggtaggaataagcaaaagtcacgtgtttaga 627  Q
    |||||||||||| ||| | |||||||||||||||||   ||||||||||||||| ||||||||    
T  41159568 catacaaagaatggggtgtttccaccaatcgtggtaattataagcaaaagtcacatgtttaga 41159506  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 469
Target Start/End: Original strand, 46268918 - 46268979
Alignment:
Q  408 ttttttgaacaaatcaaaatcgaattatattagtaaaccaatgatgatcaccccgcacaagg 469  Q
    |||||||||||||||||||| || |||||||| | || |||  |||||||||| ||||||||    
T  46268918 ttttttgaacaaatcaaaatggatttatattaatcaaacaacaatgatcaccctgcacaagg 46268979  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 627
Target Start/End: Original strand, 12376826 - 12376905
Alignment:
Q  548 aattacaaaataacactcatacaaagaatagggcgcttccaccaatcgtggtaggaataagcaaaagtcacgtgtttaga 627  Q
    ||||||| || ||||| ||||||||||| |||| | ||||||||||||||||| |||||||||||| || | ||||||||    
T  12376826 aattacataagaacacccatacaaagaacagggtgtttccaccaatcgtggtaagaataagcaaaattcgcctgtttaga 12376905  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 478
Target Start/End: Complemental strand, 31182881 - 31182811
Alignment:
Q  408 ttttttgaacaaatcaaaatcgaattatattagtaaaccaatgatgatcaccccgcacaaggtgtgaaaag 478  Q
    |||||| ||||||||||||| ||||||||||| | || |||  |||||||||| |||||||||||| ||||    
T  31182881 tttttttaacaaatcaaaatggaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaaag 31182811  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 478
Target Start/End: Original strand, 53480487 - 53480550
Alignment:
Q  415 aacaaatcaaaatcgaattatattagtaaaccaatgatgatcaccccgcacaaggtgtgaaaag 478  Q
    ||||||||||||| ||||||||||| | || |||  |||||||||| |||||||||||| ||||    
T  53480487 aacaaatcaaaatggaattatattactcaaacaacaatgatcaccctgcacaaggtgtgcaaag 53480550  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 478
Target Start/End: Complemental strand, 3533946 - 3533876
Alignment:
Q  408 ttttttgaacaaatcaaaatcgaattatattagtaaaccaatgatgatcaccccgcacaaggtgtgaaaag 478  Q
    |||||||||||||||||||| ||||||||||| | || |||  |||||||||| |||||||| ||| ||||    
T  3533946 ttttttgaacaaatcaaaatggaattatattactcaaacaacaatgatcaccctgcacaaggagtgcaaag 3533876  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 627
Target Start/End: Original strand, 40368317 - 40368396
Alignment:
Q  548 aattacaaaataacactcatacaaagaatagggcgcttccaccaatcgtggtaggaataagcaaaagtcacgtgtttaga 627  Q
    ||||||| || ||||| |||||||| || |||| | ||||||||||||||||| |||||| |||||  ||| ||||||||    
T  40368317 aattacataagaacacccatacaaaaaacagggtgtttccaccaatcgtggtaagaataaacaaaatccacctgtttaga 40368396  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 613
Target Start/End: Original strand, 34180963 - 34181028
Alignment:
Q  548 aattacaaaataacactcatacaaagaatagggcgcttccaccaatcgtggtaggaataagcaaaa 613  Q
    ||||||| || ||||| ||||||||||| |||| | |||||||||||||| || |||||| |||||    
T  34180963 aattacataagaacacccatacaaagaacagggtgtttccaccaatcgtgataagaataaacaaaa 34181028  T

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