View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5773-Insertion-3 (Length: 551)
Name: NF5773-Insertion-3
Description: NF5773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5773-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 548
Target Start/End: Original strand, 36596598 - 36597143
Alignment:
| Q |
8 |
atatctgcacctaaaactaggcttaacaccactcttaattacagtatgactcggtttatgttaggtttgcttccattttcagaacgatcatctaacagca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36596598 |
atatctgcacctaaaactaggcttaacaccactcttaattacagtatgactcggtttatgttaggtttgcttccattttcagaacgatcatctaaccgca |
36596697 |
T |
|
| Q |
108 |
cgtccaaattacacaacattaattaactagttaaccnnnnnnnnnctttcaaatttcttagtttccaacctctcaatgtgggtaa-ctacattaannnnn |
206 |
Q |
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| T |
36596698 |
cgtccaaattacacaacattaattaattagttaacctttttttt-ctttcaaatttcttagtttccaacctctcaatgtgggtaaactacattaattttt |
36596796 |
T |
|
| Q |
207 |
nnnnnnagcactcaaaatctctcaatacactctaagtagtatactagatatttgtagatgatat----atccagctcc----taattaattaatggagta |
298 |
Q |
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| T |
36596797 |
tattt-agcactcaaaatctc--aatacactctaagtagtatactagatatttgtagatgatatatccatccagctcctaattaattaattaatgtagta |
36596893 |
T |
|
| Q |
299 |
cgaatttggtttgaatgtgaatctagaactagaagcttgactttgtccattcatgcaatagaagtaagtaggtggctactcacgaatttattcatggttt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36596894 |
cgaatttggtttgaatgtgaatctagaactagaagcttgactttgtccattcatgcaatagaagtaagtaggtggctactcacgaatttattcatggttt |
36596993 |
T |
|
| Q |
399 |
ttcacggtgagtcatcttcagctttacacgtaaggagtgcaaagaaaagtacatatttcatgtataatatatgcacgacaaattattcagttattattta |
498 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36596994 |
ttcacggtgagtcatcttcaactttacacgtaaggagtgcaaagaaaagtacatatttcatgtataatatatgcacaacaaattattcagttattattta |
36597093 |
T |
|
| Q |
499 |
aacattctattctaccnnnnnnntaaataataaacattcttcttctctct |
548 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
36597094 |
aacattctattctaccaaaaaaataaataataaacattcttcttttctct |
36597143 |
T |
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