View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5773-Insertion-5 (Length: 507)
Name: NF5773-Insertion-5
Description: NF5773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5773-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Original strand, 44878603 - 44879105
Alignment:
| Q |
8 |
agttcatcaactgctacactcgttccannnnnnncttcgtttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaatttttccatc |
107 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44878603 |
agttcatcaactgctacactcgttccatttttttcttcgtttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaatttttccatc |
44878702 |
T |
|
| Q |
108 |
tcatccatcattcatcccgttttgcctaagctctcagttactttaaactcgctccggggtgggacaaacaaactggaacattgtatctccctaagagttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44878703 |
tcatccatcattcatcccgttttgcctaagctctcagttactttaaactcactccggggtgggacaaacaaactggaacattgtatcttcctaagagttg |
44878802 |
T |
|
| Q |
208 |
tcctctgcaggctattcatgtacagggtgacacaaagttcttaaagaatattgcatactttgtagcatgcaaacaacttcataagattggagctttgaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44878803 |
tcctctgcaggctattcatgtacagggtgacacaaagttcttaaagaatattgcatactttgtagcatgcaaacaacttcataagattggagctttgaca |
44878902 |
T |
|
| Q |
308 |
gataatcttgttccttctatcgtcgtcgaagaagcagacgtggaggaattaggtaacttcatgccttctattcattttattattattac---tcannnnn |
404 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44878903 |
tataatcttgttccttctatcgtcgttgaagaaacagacgtggaggaattaggtaacttcatgccttctattcattttattattattacctttcaatttt |
44879002 |
T |
|
| Q |
405 |
nnaattacttgaatgtaaaattctatttaagcgtatactacgtctatgaatggcatcgatatcaaacgaaatcttacagggaatgaaccatatatgatga |
504 |
Q |
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| T |
44879003 |
ttaattaatggaatgtaaaattctatttaagcgtatactacgtttatgaatggcatcgatatcaaacgaaatcttacagggaatgaaccatatatgatga |
44879102 |
T |
|
| Q |
505 |
gga |
507 |
Q |
| |
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||| |
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| T |
44879103 |
gga |
44879105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 47 - 362
Target Start/End: Complemental strand, 44879691 - 44879387
Alignment:
| Q |
47 |
tttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaatttttccatctcatccatcattcatcccgttttgcctaagctctcagtt |
146 |
Q |
| |
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|||||||||||||| |||||||||||||| | ||||| |||| |||||||| ||| ||||| | ||||||||||||| |||| |||| ||| | | | |
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| T |
44879691 |
tttaatgaaccttatgatatgttttcttttccattaatttggttcttttaatatttttatctcgttcatcattcatccctttttttctaaactccctgat |
44879592 |
T |
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| Q |
147 |
actttaaactcgctccggggtgggacaaacaaactggaacattgtatctccctaagagttgtcctctgcaggctattcatgtacagggtgacacaaagtt |
246 |
Q |
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||| ||||| |||| | |||||| | | ||||||||||||| |||| ||||||| ||| | ||||| |||||||||||||||||||| |
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| T |
44879591 |
actga-------ctccgaggtgtgtcaaacatatttgaacattgtatcttcctatgagttgttctccataagctat----gtacagggtgacacaaagtt |
44879503 |
T |
|
| Q |
247 |
cttaaagaatattgcatactttgtagcatgcaaacaacttcataagattggagctttgacagataatcttgttccttctatcgtcgtcgaagaagcagac |
346 |
Q |
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||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||| ||||| ||||||||||||||||||| | ||||| |||| ||||||| |
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| T |
44879502 |
cttaaagaatattgcatgctttgtagcttgcaaacaaattcataagatttgagatttgagagataatcttgttccttctgtagtcgttgaagcagcagac |
44879403 |
T |
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| Q |
347 |
gtggaggaattaggta |
362 |
Q |
| |
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| ||||||||| |||| |
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| T |
44879402 |
gcggaggaatttggta |
44879387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 8e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 45 - 497
Target Start/End: Original strand, 29677386 - 29677842
Alignment:
| Q |
45 |
cgtttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaatt----tttccatctcatccatcattcatcccgttttgcctaagctc |
140 |
Q |
| |
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|||||||||| |||||| || ||||||||||||| |||||||| ||||||||| ||| ||||| | ||||||||||||| ||||| |||| ||| |
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| T |
29677386 |
cgtttaatgagccttaagatctgttttcttttgcattaatctgatccttttaaaaaaaattt--atctcgttcatcattcatcccattttgtctaaactc |
29677483 |
T |
|
| Q |
141 |
tcagttactttaaactcgctccggggtgggacaaacaaactggaacattgtatctccctaagagttgtcctctgcaggctattcatgtacagggtgacac |
240 |
Q |
| |
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||| |||||||||| |||| ||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||| ||||||| |||||| | |
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| T |
29677484 |
ccaggtactttaaaccgactccaaggtgggacaaacagactggaacgttgtatcttcctaagagttgtcctctacaggctattaatgtacatggtgactc |
29677583 |
T |
|
| Q |
241 |
aaagttcttaaagaatattgcatactttgtagcatgcaaacaacttcataagattggagctttgacagataatcttgttccttctatcgtcgtcgaagaa |
340 |
Q |
| |
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|||||||||||| ||||| |||| ||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| || | |||||| |
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| T |
29677584 |
aaagttcttaaaaaatatcgcatgtcttgaagcatgcaaaaaacttcatatgattggagctttgacagataatcttgttccttctatagttgctgaagaa |
29677683 |
T |
|
| Q |
341 |
gcagacgtggaggaattaggtaacttcatgccttctattcattttattattatt--actcannnnnnna--attacttgaatgtaaaattctatttaagc |
436 |
Q |
| |
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||||| |||||||| || |||||||||||||||||||||||||||||||||||| | | | | || | ||||||||| ||||||||||| | |
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| T |
29677684 |
gcagaggtggaggactttggtaacttcatgccttctattcattttattattattgcatttaaatttttaatatcatgtgaatgtaagattctatttaacc |
29677783 |
T |
|
| Q |
437 |
gtatactacgtctatgaatggcatcgatatcaaacgaaatcttacagggaatgaaccatat |
497 |
Q |
| |
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||||||| ||||||||||||||||| || |||| ||||||| |||||||||||||||| |
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| T |
29677784 |
atatactaattctatgaatggcatcgacattaaac--aatcttatagggaatgaaccatat |
29677842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 45 - 497
Target Start/End: Original strand, 26458584 - 26459055
Alignment:
| Q |
45 |
cgtttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaatt----tttccatctcatccatcattcatcccgttttgcctaagctc |
140 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||| |||||||| ||||||||| ||| ||||| | ||||||||||||| ||||| |||| ||| |
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| T |
26458584 |
cgtttaatgagccttaagatctgttttcttttgcattaatctgatccttttaaaaaaaattt--atctcgttcatcattcatcccattttgtctaaactc |
26458681 |
T |
|
| Q |
141 |
tcagttactttaaactcgctccggggtgggacaaacaaactggaacattgtatctccctaagagttgtcctctgcagg------ctattcatgtacaggg |
234 |
Q |
| |
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||| |||||||||| |||| ||||||||||||| |||||||| |||||||| ||||||||||||||||| || | || || ||||||| || |
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| T |
26458682 |
ccaggtactttaaaccgactccaaggtgggacaaacagactggaacgttgtatcttcctaagagttgtcctctacaagtacaagctgttaatgtacatgg |
26458781 |
T |
|
| Q |
235 |
tgacacaaagttcttaaagaatattgcatactttgtagcatgcaaacaacttcataagattggagctttgacagataatcttgttccttctatcgtcgtc |
334 |
Q |
| |
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||| |||||| |||||| |||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
26458782 |
tgaatcaaagtacttaaaaaatattgcatgtcttgaagcatgcaaacgacttcatatgattggagctttgacagataatctcgttccttctatagtcgtt |
26458881 |
T |
|
| Q |
335 |
gaagaagcagacgtggaggaattaggtaacttcatgccttcta-------ttcattttattattattac--tcannnnnnna--attacttgaatgtaaa |
423 |
Q |
| |
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||| ||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||| | | | | ||||| ||||||||| |
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| T |
26458882 |
gaaaaagcagaggtggaggactttggtaacttcatgccttctattcatttttcattttattattattgcctttaaatttttaatattacgtgaatgtaag |
26458981 |
T |
|
| Q |
424 |
attctatttaagcgtatactacgtctatgaatggcatcgatatcaaacgaaatcttacagggaatgaaccatat |
497 |
Q |
| |
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|||||||||| | ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
26458982 |
tttctatttaaccatatactaattctatgaatggcatcgacatcaaacaaaatcttacagggaatgaaccatat |
26459055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 166 - 497
Target Start/End: Complemental strand, 11491904 - 11491566
Alignment:
| Q |
166 |
gtgggacaaacaaactggaacattgtatctccctaagagttgtcctctgcaggctattcatgtacagggtgacacaaagttcttaaagaatattgcatac |
265 |
Q |
| |
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|||||||||||| | |||| ||||||||| |||||||||||||| | || |||||||||||||| ||||||| || ||||||||||||||||||| | |
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| T |
11491904 |
gtgggacaaacataaaggaatattgtatcttcctaagagttgtcccatacatgctattcatgtacaaggtgacaataaattcttaaagaatattgcatgc |
11491805 |
T |
|
| Q |
266 |
tttgtagcatgcaaacaacttcataagattggagctttgacagataatcttgttccttctatcgtcgtcgaagaagcagacgtggaggaattaggtaac- |
364 |
Q |
| |
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||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| || || ||||||||||| ||||||||||| |||||| |
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|
| T |
11491804 |
cttgaagcatgcaaacaactacataagattggagcgttgacagataatctcgttccttctattgttgttgaagaagcagaggtggaggaattcggtaact |
11491705 |
T |
|
| Q |
365 |
-ttcatgccttctattcattt---tattattattac---tcannnnnnnaattacttgaatgtaaaattctatttaagcgtatactacgtctatgaatgg |
457 |
Q |
| |
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|| |||||||||||||||| | |||||||| | ||| | |||||||||||| |||||||||||| | |||| | ||| ||||||| |
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| T |
11491704 |
ttttgtgccttctattcattttgattttattattgcctttcatttttcacactacttgaatgtagaattctatttaaccatata-aaattctctgaatgg |
11491606 |
T |
|
| Q |
458 |
catcgatatcaaacgaaatcttacagggaatgaaccatat |
497 |
Q |
| |
|
||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
11491605 |
cattgacatcaaacaaaatcttacagggaatgaaccatat |
11491566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 306 - 206
Alignment:
| Q |
225 |
atgtacagggtgacacaaagttcttaaagaatattgcatactttgtagcatgcaaacaacttcataagattggagctttgacagataatcttgttccttc |
324 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||| |
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| T |
306 |
atgtacaggctgacacaaagttcttaaagaatattgcatgctttgtagcttgcaaacaaattcataagattggaggtttgagagataatcttgttccttc |
207 |
T |
|
| Q |
325 |
t |
325 |
Q |
| |
|
| |
|
|
| T |
206 |
t |
206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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