View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5773-Insertion-6 (Length: 502)
Name: NF5773-Insertion-6
Description: NF5773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5773-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 37325476 - 37325624
Alignment:
| Q |
45 |
aactcacagttaatttcaagggcaaatgtggaaacatgcactgtcttgctcctttctttccactttggagagaaccacaaaataagtgggacccacacga |
144 |
Q |
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| T |
37325476 |
aactcatagtcaatttcaagggcaaatgtggaaacatgcattgtctagctcatttcttctcactttggagagaactacaaaatgcgtgggacccacacaa |
37325575 |
T |
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| Q |
145 |
attttgtctctcttcacaatttctctgctgtcccagacgagagaaatgg |
193 |
Q |
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| T |
37325576 |
ttttggtctctcttcacaatttatctgttgtgccaaacgagagaaatgg |
37325624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 20383150 - 20383017
Alignment:
| Q |
56 |
aatttcaagggcaaatgtggaaacatgcactgtcttgctcctttctttccactttggagagaaccacaaaataagtgggacccacacgaattttgtctct |
155 |
Q |
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| T |
20383150 |
aattttaagggcaaaaatggaaacatgcactttctatctcctttcttctcaatttggagagaaccccaaaaaacgtgggacccacgcaaattttgtctct |
20383051 |
T |
|
| Q |
156 |
cttcacaatttctctgctgtcccagacgagagaa |
189 |
Q |
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| T |
20383050 |
attcacagtttctttgctgtcccaaacgagagaa |
20383017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 36129508 - 36129540
Alignment:
| Q |
303 |
attcatgttttcatataaattttagatttgatg |
335 |
Q |
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| T |
36129508 |
attcatgttttcatataaattttagatttgatg |
36129540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 30534673 - 30534635
Alignment:
| Q |
300 |
ttcattcatgttttcatataaattttagatttgatgctt |
338 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
30534673 |
ttcactcatgttttcatataaattttagatttgatgctt |
30534635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 24559549 - 24559581
Alignment:
| Q |
299 |
attcattcatgttttcatataaattttagattt |
331 |
Q |
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| T |
24559549 |
attcattcatgttttcatatgaattttagattt |
24559581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 4914936 - 4914972
Alignment:
| Q |
299 |
attcattcatgttttcatataaattttagatttgatg |
335 |
Q |
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| T |
4914936 |
attcattcatgttttcatatgaattttagatttgatg |
4914972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 9829873 - 9829837
Alignment:
| Q |
299 |
attcattcatgttttcatataaattttagatttgatg |
335 |
Q |
| |
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| T |
9829873 |
attcactcatgttatcatataaattttagatttgatg |
9829837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 33459185 - 33459150
Alignment:
| Q |
300 |
ttcattcatgttttcatataaattttagatttgatg |
335 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
33459185 |
ttcattgatgttttcatataaattttagatttgatg |
33459150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 34704518 - 34704484
Alignment:
| Q |
300 |
ttcattcatgttttcatataaattttagatttgat |
334 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
34704518 |
ttcattcatgttttcatatgaattttagatttgat |
34704484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 9515519 - 9515557
Alignment:
| Q |
300 |
ttcattcatgttttcatataaattttagatttgatgctt |
338 |
Q |
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|||| |||||||||||||| ||||||||||||||||||| |
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| T |
9515519 |
ttcactcatgttttcatatgaattttagatttgatgctt |
9515557 |
T |
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