View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5773-Insertion-7 (Length: 426)
Name: NF5773-Insertion-7
Description: NF5773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5773-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Complemental strand, 46535476 - 46535061
Alignment:
| Q |
8 |
atatagaactttcaaactcatcctttctccttcaatattttctctataatcacgnnnnnnnnc-cttttagagatattcttgagatgtatcatccatatc |
106 |
Q |
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| T |
46535476 |
atatagaactttcaaactcatcctttctccttcaatattttctctataatcacgttttttttatcttttagagatattcttgagatgtatcatccatatc |
46535377 |
T |
|
| Q |
107 |
cagctctctaccaagcaagccttgaggcctgggaaaggaaaagaaaaacggttcattatgagactttgatgtagaccctttggcatggtcgataccattg |
206 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46535376 |
cagctctctaccaagcaagccttgatgcctgggaaagggaaagaaaaacggttcattatgagactttgatgtagaccctttggcatggtcgataccattg |
46535277 |
T |
|
| Q |
207 |
gataagcatcactgtggccaattctccatggctgcggttcagtcaaatgtaaatatggaagatcacagtgaagttaaggttggcaatggtgcactccttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46535276 |
gataagcatcactgtggccaattctccatggctgcggttcagtcaaatgtaaatatggaagatcacagtgaagttaaggttggcaatggtgcactctttg |
46535177 |
T |
|
| Q |
307 |
ttggagtttatggtagctacaaaggcgacacggcatct-atatgtccggaatcaca-tttccaggctctactgagtgagtcttgtttgtttctgctttga |
404 |
Q |
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|||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46535176 |
ttggagtttatgatggctacaaaggcgacacggcatctaatatgtcaggaatcacattttccaggctctagtgagtgagtcttgtttgtttctgctttga |
46535077 |
T |
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| Q |
405 |
ttttttgtacattctt |
420 |
Q |
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| T |
46535076 |
ttttttgtacattctt |
46535061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 46550411 - 46550303
Alignment:
| Q |
194 |
gtcgataccattggataagcatcactgtggccaattctccatggctgcggttcagtcaaatgtaaatatggaagatcacagtgaagttaaggttggcaat |
293 |
Q |
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|||||| ||| |||| ||||||| ||||||||||| |||||||| || |||||||||||| | |||||||||||| | || ||||| ||||||||||| |
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| T |
46550411 |
gtcgatgccactggaagagcatcagtgtggccaattttccatggcagcagttcagtcaaatatgaatatggaagataaaagcaaagttcaggttggcaat |
46550312 |
T |
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| Q |
294 |
ggtgcactc |
302 |
Q |
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||||||||| |
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| T |
46550311 |
ggtgcactc |
46550303 |
T |
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