View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5773-Insertion-9 (Length: 145)
Name: NF5773-Insertion-9
Description: NF5773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5773-Insertion-9 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 1e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 20899880 - 20900016
Alignment:
| Q |
8 |
atagttactatttcatgacaattttctttacctttttgtggtcagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttcaaggtcata |
107 |
Q |
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| T |
20899880 |
atagttactatttcttgacaattttctttacctttttgtggttagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttcaaggtcata |
20899979 |
T |
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| Q |
108 |
ctctccctcgacgagaactttttaccaatattcttaat |
145 |
Q |
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| T |
20899980 |
ctctccctcgacgagaa-tatttaccaatattcttaat |
20900016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 13949645 - 13949782
Alignment:
| Q |
8 |
atagttactatttcatgacaattttctttacctttttgtggtcagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttcaaggtcata |
107 |
Q |
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| T |
13949645 |
atagttgctatttcttgacaattttctttacctttttatggtcagtgttggtgccgggtgctcccaactcctgtctgatatgcaggccttcaaggtcata |
13949744 |
T |
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| Q |
108 |
ctctccctcgacgagaactttttaccaatattcttaat |
145 |
Q |
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| T |
13949745 |
ctcttcctcgacgagaatactttaccgatattcttaat |
13949782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 98; Significance: 1e-48; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 1785 - 1922
Alignment:
| Q |
8 |
atagttactatttcatgacaattttctttacctttttgtggtcagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttcaaggtcata |
107 |
Q |
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| T |
1785 |
atagttgctatttcttgacaattttctttacctttttatggtcagtgttggtgccgggtgctcccaactcctgtctgatatgcaggccttcaaggtcata |
1884 |
T |
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| Q |
108 |
ctctccctcgacgagaactttttaccaatattcttaat |
145 |
Q |
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| T |
1885 |
ctcttcctcgacgagaatactttaccgatattcttaat |
1922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 40700883 - 40700947
Alignment:
| Q |
41 |
ttttgtggtcagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttcaaggtca |
105 |
Q |
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| T |
40700883 |
ttttgtggtcagtgttggtgctggctgctcgcaactgctctcagatatgcaggctttcaaggtca |
40700947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 40719150 - 40719207
Alignment:
| Q |
41 |
ttttgtggtcagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttc |
98 |
Q |
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| T |
40719150 |
ttttgtggtcagtgttggtgcccgctgctcgcaactgctctcagatatgcaggctttc |
40719207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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