View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5773_low_1 (Length: 253)
Name: NF5773_low_1
Description: NF5773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5773_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 44877825 - 44877976
Alignment:
| Q |
30 |
aaacttttatcctatttaatcttgttcattcgcacttggaagtacatggatagatatgtttagaaggatattcataactatacatcatcagaaaaatcat |
129 |
Q |
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| T |
44877825 |
aaacttttatcctatttaatcttgttcattcgcacttggaagtacatggatagatatgtttagaaggatattcataactatacatcatcagaaaaatcat |
44877924 |
T |
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| Q |
130 |
caaatgttctcacatcaccgtctgtattcatttgcaaactactccatcagag |
181 |
Q |
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| T |
44877925 |
caaatgttctcacatcaccgtctgtattcatttgcaaactactccaacagag |
44877976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 44877999 - 44878078
Alignment:
| Q |
174 |
catcagagctttcaggatctctaaacggggaaccaaacatatctgacttttaaacatatctgactgactaagctcagttt |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44877999 |
catcagagctttcaggatctctaaacggggaaccaaacatatctgacttttaaacatatctgactgactaagctcagttt |
44878078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 28921704 - 28921670
Alignment:
| Q |
112 |
catcatcagaaaaatcatcaaatgttctcacatca |
146 |
Q |
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| T |
28921704 |
catcatcagaaaaatcatcaaatgttctcatatca |
28921670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 28921145 - 28921117
Alignment:
| Q |
225 |
aaacatatctgactgactaagctcagttt |
253 |
Q |
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| T |
28921145 |
aaacatatctgactgactaagctcagttt |
28921117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 42892387 - 42892353
Alignment:
| Q |
112 |
catcatcagaaaaatcatcaaatgttctcacatca |
146 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
42892387 |
catcatcagaaaaatcatcaaatgttctcatatca |
42892353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 42896673 - 42896645
Alignment:
| Q |
225 |
aaacatatctgactgactaagctcagttt |
253 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42896673 |
aaacatatctgactgactaagctcagttt |
42896645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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