View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5773_low_2 (Length: 242)
Name: NF5773_low_2
Description: NF5773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5773_low_2 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 44878607 - 44878383
Alignment:
| Q |
18 |
gaactaagccatctactgggagtggtggtgagcaatataagcatatcaaagtaatgtaggaactaagattccgatcagtgcagtgacagtgcttgcacat |
117 |
Q |
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| T |
44878607 |
gaactaagccatctactgggagtggtggtgagcaatataagcatatcaaagtaatgtaggaactaagattccgatcagtgcagtgacagtgcttgcacat |
44878508 |
T |
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| Q |
118 |
gatcaagtagctcgtgttgccaagatgttggtgatgagtttggaactgcttcaaacataaaaagtaagggatatcgacagtctaagcttggtgcaatcgc |
217 |
Q |
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| T |
44878507 |
gatcaagtagctcgtgttgccaagatgttggtgatgagtttggaactgcttcaaacataaaaagtaagggatatcgacagtctaagcttggtgcaatcgc |
44878408 |
T |
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| Q |
218 |
ttctgctcagcagaggcttaagctt |
242 |
Q |
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||||||||| |||||||||||||| |
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| T |
44878407 |
ttctgctcaaaagaggcttaagctt |
44878383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 28920539 - 28920665
Alignment:
| Q |
117 |
tgatcaagtagctcgtgttgccaagatg-ttggtgatgagtttggaactgcttcaaacataaaaagtaagggatatcgacagtctaagcttggtgcaatc |
215 |
Q |
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||||||| | ||||||||| | |||||| |||| |||||||||||||||||||||||||| || |||| || ||||||||||| ||||||||||||| |
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| T |
28920539 |
tgatcaaattgctcgtgttactaagatgcttggcgatgagtttggaactgcttcaaacatcaagagtagggtgaatcgacagtctgtgcttggtgcaatc |
28920638 |
T |
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| Q |
216 |
gcttctgctcagcagaggcttaagctt |
242 |
Q |
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| T |
28920639 |
acttctgctcagcagaggcttaagctt |
28920665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 42891222 - 42891348
Alignment:
| Q |
117 |
tgatcaagtagctcgtgttgccaagatg-ttggtgatgagtttggaactgcttcaaacataaaaagtaagggatatcgacagtctaagcttggtgcaatc |
215 |
Q |
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||||||| || |||||||| |||||||| ||| |||||| |||||||||||||||||| ||||||| || ||||||||||| ||||||||||||| |
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| T |
42891222 |
tgatcaaatatctcgtgttaccaagatgcttgccaatgagtatggaactgcttcaaacatcaaaagtagggtgaatcgacagtctgtgcttggtgcaatc |
42891321 |
T |
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| Q |
216 |
gcttctgctcagcagaggcttaagctt |
242 |
Q |
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|||||| |||||||||||||||||| |
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| T |
42891322 |
agttctgcccagcagaggcttaagctt |
42891348 |
T |
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