View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5774-Insertion-11 (Length: 403)

Name: NF5774-Insertion-11
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5774-Insertion-11
NF5774-Insertion-11
[»] chr3 (2 HSPs)
chr3 (8-403)||(4867519-4867914)
chr3 (25-119)||(33286948-33287042)
[»] chr6 (4 HSPs)
chr6 (8-403)||(19116943-19117330)
chr6 (8-253)||(26645131-26645376)
chr6 (8-253)||(26751097-26751342)
chr6 (13-63)||(28081119-28081169)
[»] chr1 (2 HSPs)
chr1 (8-348)||(7324802-7325142)
chr1 (73-353)||(16091934-16092214)
[»] chr5 (2 HSPs)
chr5 (8-348)||(28560148-28560488)
chr5 (8-348)||(28552180-28552520)
[»] chr4 (4 HSPs)
chr4 (25-321)||(1667669-1667965)
chr4 (13-296)||(45181210-45181493)
chr4 (13-62)||(9399338-9399387)
chr4 (303-355)||(18392746-18392798)


Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Original strand, 4867519 - 4867914
Alignment:
8 gatcatccattggattgtgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4867519 gatcatccattggattgtgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggct 4867618  T
108 gcgatatagagaaaggtcttcaaatggggtgctagttttggctctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattcca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4867619 gcgatatagagaaaggtcttcaaatggggtgctagttttggctctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattcca 4867718  T
208 gcacgatcaataatttcttctgcatattttttctgagacaaaaataagccaccaggatgacgtgtgacagcaatacccaaaaaataattcaacaatccca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4867719 gcacgatcaataatttcttctgcatattttttctgagacaaaaataagccaccaggatgacgtgtgacagcaatacccaaaaaataattcaacaatccca 4867818  T
308 aatctttcatagcaaactcggaactaaggagtgatatgatagactttcaaaggtcgtcagaggaagaggaagcagtaagaatgatatcatctacat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4867819 aatctttcatagcaaactcggaactaaggagtgatatgatagactttcaaaggtcgtcagaggaagaggaagcagtaagaatgatatcatctacat 4867914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 33287042 - 33286948
Alignment:
25 tgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggctgcgatatagaga 119  Q
    |||||||| | ||| |||||||| || ||||| || ||| |||| | |||||||||||| ||||| ||||| || ||||| || |||||||||||    
33287042 tgcataaaaagacagatttgttgaacagcatatgagatgtcaggtcgtgtgaaggtgagatattgaagggcacctgcaagactacgatatagaga 33286948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 403
Target Start/End: Original strand, 19116943 - 19117330
Alignment:
8 gatcatccattggattgtgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggct 107  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||| ||||||| |||||||||||     
19116943 gatcatccatcggattgtgcgtaaataaacatatatgttgcactacataagaaatgtcaggccttgcgaaggtgaggtaatgtagggtgccagcaaggcc 19117042  T
108 gcgatatagagaaaggtcttcaaatggggtgctagttttggctctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattcca 207  Q
    ||||||||||||| || |||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19117043 gcgatatagagaagggccttcaaattgggtgctacttttggcgctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattcca 19117142  T
208 gcacgatcaataatttcttctgcatattttttctgagacaaaaataagccaccaggatgacgtgtgacagcaatacccaaaaaataattcaacaatccca 307  Q
    ||||| | |||||||||||||||||  ||||||| |||||||||||||||||||| ||||| |||||||  ||||||||||||||||||||| |||||||    
19117143 gcacgtttaataatttcttctgcattctttttctaagacaaaaataagccaccagaatgacatgtgacaataatacccaaaaaataattcaataatccca 19117242  T
308 aatctttcatagcaaactcggaactaaggagtgatatgatagactttcaaaggtcgtcagaggaagaggaagcagtaagaatgatatcatctacat 403  Q
    |||| ||||||| ||||||||| |||||||||||||||  ||||||||||| ||| ||      ||| ||| ||||||||||||||||||||||||    
19117243 aatcattcatagaaaactcggagctaaggagtgatatg--agactttcaaaagtcatc------agaagaaacagtaagaatgatatcatctacat 19117330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 26645131 - 26645376
Alignment:
8 gatcatccattggattgtgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggct 107  Q
    ||||||| || ||||| |||||||||||||| || | ||| |||||||| |||||| ||| ||| || || ||||| |||||||| || |||||||||||    
26645131 gatcatctatcggattatgcataaataaacaaatctattgtactgcataggaaatgtcagacctagtaaatgtgagatattgtagagctccagcaaggct 26645230  T
108 gcgatatagagaaaggtcttcaaatggggtgctagttttggctctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattcca 207  Q
    |||||| |||||  |||| ||| |||||||| || ||||||  || | ||| ||||| || || ||    |||||||| || ||||| || | ||| |||    
26645231 gcgatagagagatgggtcctcatatggggtggtacttttggtgctaagcttcggttttgtgtcgactagggtaggacacggcttacacgaggacatgcca 26645330  T
208 gcacgatcaataatttcttctgcatattttttctgagacaaaaata 253  Q
     |||  ||||| || ||||||||||| ||||||||||| |||||||    
26645331 acactttcaatgatctcttctgcatactttttctgagataaaaata 26645376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 26751097 - 26751342
Alignment:
8 gatcatccattggattgtgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggct 107  Q
    ||||||| || ||||| |||||||||||||| || | ||| |||||||| |||||| ||| ||| || || ||||| |||||||| || |||||||||||    
26751097 gatcatctatcggattatgcataaataaacaaatctattgtactgcataggaaatgtcagacctagtaaatgtgagatattgtagagctccagcaaggct 26751196  T
108 gcgatatagagaaaggtcttcaaatggggtgctagttttggctctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattcca 207  Q
    |||||| |||||  |||| ||| |||||||| || ||||||  || | ||| ||||| || || ||    |||||||| || ||||| || | ||| |||    
26751197 gcgatagagagatgggtcctcatatggggtggtacttttggtgctaagcttcggttttgtgtcgactagggtaggacacggcttacacgaggacatgcca 26751296  T
208 gcacgatcaataatttcttctgcatattttttctgagacaaaaata 253  Q
     |||  ||||| || ||||||||||| ||||||||||| |||||||    
26751297 acactttcaatgatctcttctgcatactttttctgagataaaaata 26751342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 28081169 - 28081119
Alignment:
13 tccattggattgtgcataaataaacatatttgttgcactgcataagaaatg 63  Q
    ||||| ||||||||||| || | |||||||||||| |||||||||||||||    
28081169 tccatgggattgtgcatgaagagacatatttgttgtactgcataagaaatg 28081119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 7324802 - 7325142
Alignment:
8 gatcatccattggattgtgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggct 107  Q
    |||||||||| |||||||||||||||||||| || ||||| |||||||| |||||| ||||||| || || ||||| || ||||| || |||||||||||    
7324802 gatcatccatcggattgtgcataaataaacaaatctgttgtactgcataggaaatgtcaggcctagtaaatgtgagatactgtagagctccagcaaggct 7324901  T
108 gcgatatagagaaaggtcttcaaatggggtgctagttttggctctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattcca 207  Q
    |||||| |||||  |||| ||| |||||||| || | ||||| || | ||| ||||| || || || |  |||||||| |  ||||| || | ||| |||    
7324902 gcgatagagagatgggtcctcatatggggtggtactgttggcgctaagcttcggttttgtgtcgactggggtaggacacgacttacacgaggacatgcca 7325001  T
208 gcacgatcaataatttcttctgcatattttttctgagacaaaaataagccaccaggatgacgtgtgacagcaatacccaaaaaataattcaacaatccca 307  Q
    ||||| ||||  || ||||||||||| ||||||||||| |||||||  ||| |||  |  || ||||| ||||| ||||| ||||| || |   | ||||    
7325002 gcacgttcaaggatctcttctgcatactttttctgagataaaaatagaccatcagtgtatcgagtgactgcaatccccaagaaatagttaagggacccca 7325101  T
308 aatctttcatagcaaactcggaactaaggagtgatatgata 348  Q
    |||||||||||||||| || ||||| || ||||||||||||    
7325102 aatctttcatagcaaattcagaactgagaagtgatatgata 7325142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 353
Target Start/End: Complemental strand, 16092214 - 16091934
Alignment:
73 gtgaaggtgaggtattgtagggcgccagcaaggctgcgatatagagaaaggtcttcaaatggggtgctagttttggctctcatctttggtttagtatcaa 172  Q
    ||||| ||||||||||| || || ||  ||||||| |||||||   |  |||||||| | || |||||||| ||||| || | |||  ||||||| ||||    
16092214 gtgaaagtgaggtattggagagcaccgacaaggctacgatataattatgggtcttcatagggagtgctagtcttggcgctaagcttcagtttagtgtcaa 16092115  T
173 ccgttgtaggacatggtttacaagaagccattccagcacgatcaataatttcttctgcatattttttctgagacaaaaataagccaccaggatgacgtgt 272  Q
    |||  || |||| || ||| || || | ||| || || || |||| |||||| ||| |||| ||||||||||| || || |||||||||  ||| || ||    
16092114 ccgaagtgggacgtgatttgcatgatgacatgcctgctcgctcaagaatttcatctacatactttttctgagataagaacaagccaccatcatgtcgagt 16092015  T
273 gacagcaatacccaaaaaataattcaacaatcccaaatctttcatagcaaactcggaactaaggagtgatatgatagactt 353  Q
     || |||||||||||||||||| |||    |||||| ||||| |||||||| || || || ||  ||||||||||||||||    
16092014 aactgcaatacccaaaaaataactcagtggtcccaagtcttttatagcaaattcagagctgagtcgtgatatgatagactt 16091934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 28560488 - 28560148
Alignment:
8 gatcatccattggattgtgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggct 107  Q
    |||||||||| ||||| |||||||||||||| || ||||| |||||||| ||||||  |||||| || || ||||| || ||||| || ||||||||| |    
28560488 gatcatccatcggattatgcataaataaacaaatctgttgtactgcataggaaatggtaggcctcgtaaatgtgagatactgtagagctccagcaaggtt 28560389  T
108 gcgatatagagaaaggtcttcaaatggggtgctagttttggctctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattcca 207  Q
    ||| || |||||  |||| ||| |||||||| || ||||||| || | ||| ||||| || || ||||  ||||||||  | ||||| || | ||| |||    
28560388 gcggtagagagatgggtcctcatatggggtggtaattttggcactaagcttcggttttgtgtcgaccggggtaggacacagcttacacgaggacatgcca 28560289  T
208 gcacgatcaataatttcttctgcatattttttctgagacaaaaataagccaccaggatgacgtgtgacagcaatacccaaaaaataattcaacaatccca 307  Q
    ||||  ||||| || ||||||||||| ||||||| ||| |||||||  ||| |||  |    |||||| |||||||| || ||||| || |  || ||||    
28560288 gcacattcaatgatctcttctgcatactttttctaagataaaaatagaccatcagtgtatattgtgactgcaataccaaagaaatagttaaggaacccca 28560189  T
308 aatctttcatagcaaactcggaactaaggagtgatatgata 348  Q
    |||||||||||||||| || ||||| || ||||||||||||    
28560188 aatctttcatagcaaattcagaactgagaagtgatatgata 28560148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 28552520 - 28552180
Alignment:
8 gatcatccattggattgtgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggct 107  Q
    |||||||||| | |||  ||||||||||||| || ||||| |||||||| ||||||  |||||| || || ||||| |||||||| || ||||||||| |    
28552520 gatcatccatcgaattacgcataaataaacaaatctgttgtactgcataggaaatggtaggcctagtaaatgtgagatattgtagagctccagcaaggtt 28552421  T
108 gcgatatagagaaaggtcttcaaatggggtgctagttttggctctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattcca 207  Q
    ||| || |||||  |||| | | |||||||| || ||||| | || | ||| ||||| || || |||   ||||||||| | ||||| || | ||| |||    
28552420 gcggtagagagattggtccttatatggggtggtacttttgccactaagcttcggttttgtgtcgaccagggtaggacatagcttacacgaggacatgcca 28552321  T
208 gcacgatcaataatttcttctgcatattttttctgagacaaaaataagccaccaggatgacgtgtgacagcaatacccaaaaaataattcaacaatccca 307  Q
    ||||  ||||| || ||||||||||| ||||| ||||| |||||||  ||| |||  |  | |||||| |||||||  || ||||| || |   | ||||    
28552320 gcacattcaatgatctcttctgcatactttttatgagataaaaatagaccatcagtgtatcttgtgactgcaatacgaaagaaatagttaagggacccca 28552221  T
308 aatctttcatagcaaactcggaactaaggagtgatatgata 348  Q
    |||||||||||||||| || ||||| || ||||||||||||    
28552220 aatctttcatagcaaattcagaactgagaagtgatatgata 28552180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 321
Target Start/End: Complemental strand, 1667965 - 1667669
Alignment:
25 tgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggctgcgatatagagaaaggt 124  Q
    |||||||| | |||||| ||||| || ||||| | |||| | || || ||||| ||||||||||| || || || |||||||| || ||||  ||  |||    
1667965 tgcataaaaagacatatctgttgtaccgcatatgtaatgtcgggtctcgtgaaagtgaggtattggagagcaccggcaaggctacggtataatgatgggt 1667866  T
125 cttcaaatggggtgctagttttggctctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattccagcacgatcaataatttc 224  Q
    ||||| | || |||||||| || || || | ||| |||||||| ||||| |  || ||||||| ||| || || | ||| || || || | || ||||||    
1667865 cttcatagggagtgctagtcttagcgctaagcttcggtttagtgtcaactgaagtgggacatgatttgcatgatgacatgcctgctcgcttaagaatttc 1667766  T
225 ttctgcatattttttctgagacaaaaataagccaccaggatgacgtgtgacagcaatacccaaaaaataattcaacaatcccaaatctttcatagca 321  Q
     |||||||| ||||||||||| || || || ||||||  ||| || || || |||||||||||||||||| |||    |||||| ||||||||||||    
1667765 atctgcatactttttctgagataagaacaaaccaccatcatgtcgagtaactgcaatacccaaaaaataactcagtggtcccaagtctttcatagca 1667669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 45181493 - 45181210
Alignment:
13 tccattggattgtgcataaataaacatatttgttgcactgcataagaaatgccaggccttgtgaaggtgaggtattgtagggcgccagcaaggctgcgat 112  Q
    ||||| ||||||||||| ||||| ||||| ||||| || ||||| |||||  | || ||||| || ||||| ||||| || || || |||||||||||||    
45181493 tccatcggattgtgcatgaataagcatatctgttggaccgcatatgaaatatcgggtcttgtaaaagtgagatattgaagagcacctgcaaggctgcgat 45181394  T
113 atagagaaaggtcttcaaatggggtgctagttttggctctcatctttggtttagtatcaaccgttgtaggacatggtttacaagaagccattccagcacg 212  Q
    |||  ||  | || ||| |||| || || |   |||  || |  |||| ||| || |||||||  ||||||||||  |||||||| | ||| ||||||||    
45181393 ataaggatggatcctcatatggagtactggagatggtgctaagttttgatttggtgtcaaccggggtaggacatgacttacaagatgacataccagcacg 45181294  T
213 atcaataatttcttctgcatattttttctgagacaaaaataagccaccaggatgacgtgtgacagcaatacccaaaaaataatt 296  Q
     ||||  |  ||||||||||| ||||||||||| || ||||  ||||| | ||| || || |||| ||| ||||||||||||||    
45181293 ttcaagcacctcttctgcatactttttctgagataagaatataccacctgaatgtcgagttacagaaatgcccaaaaaataatt 45181210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 9399387 - 9399338
Alignment:
13 tccattggattgtgcataaataaacatatttgttgcactgcataagaaat 62  Q
    ||||| ||||||||||||||||||||||||| ||| || ||||| |||||    
9399387 tccatcggattgtgcataaataaacatatttattggaccgcatatgaaat 9399338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 18392798 - 18392746
Alignment:
303 tcccaaatctttcatagcaaactcggaactaaggagtgatatgatagactttc 355  Q
    ||||||||||||||||||||| || ||||| || ||||| |||||||| ||||    
18392798 tcccaaatctttcatagcaaattctgaacttagtagtgaaatgatagattttc 18392746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University