View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5774-Insertion-12 (Length: 316)
Name: NF5774-Insertion-12
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774-Insertion-12 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 33082328 - 33082020
Alignment:
| Q |
8 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacaaaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33082328 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
33082229 |
T |
|
| Q |
108 |
gaagagagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggttagcaaatatagctgagaagattaatgatgagaaactgaggaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33082228 |
gaagagagggttcaaacaagggatcagttgaagtccgagaaacaactaaaaaaggtcagcaaatatagctgagaagattaatgatgagaaactgaggaag |
33082129 |
T |
|
| Q |
208 |
attgcaaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttatt |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33082128 |
attgcaaagagagagaagaagctattatagcctggatttgaaggtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttatt |
33082029 |
T |
|
| Q |
308 |
gatattgtg |
316 |
Q |
| |
|
||| ||||| |
|
|
| T |
33082028 |
gattttgtg |
33082020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 33092188 - 33091880
Alignment:
| Q |
8 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacaaaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33092188 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
33092089 |
T |
|
| Q |
108 |
gaagagagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggttagcaaatatagctgagaagattaatgatgagaaactgaggaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33092088 |
gaagagagggttcaaacaagggatcagttgaagtccgagaaacaactaaaaaaggtcagcaaatatagctgagaagattaatgatgagaaactgaggaag |
33091989 |
T |
|
| Q |
208 |
attgcaaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttatt |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33091988 |
attgcaaagagagagaagaagctattatagcctggatttgaaggtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttatt |
33091889 |
T |
|
| Q |
308 |
gatattgtg |
316 |
Q |
| |
|
||| ||||| |
|
|
| T |
33091888 |
gattttgtg |
33091880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 33099684 - 33099376
Alignment:
| Q |
8 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacaaaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33099684 |
gaagagagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacagaaacggaagaaaaggcagcagaaaaacgcagtgaaatgg |
33099585 |
T |
|
| Q |
108 |
gaagagagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggttagcaaatatagctgagaagattaatgatgagaaactgaggaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33099584 |
gaagagagggttcaaacaagggatcagttgaagtccgagaaacaactaaaaaaggtcagcaaatatagctgagaagattaatgatgagaaactgaggaag |
33099485 |
T |
|
| Q |
208 |
attgcaaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttatt |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33099484 |
attgcaaagagagagaagaagctattatagcctggatttgaaggtcgtaaggaaggatttcttaatggtatttctggctaacttggctgtgaaatttatt |
33099385 |
T |
|
| Q |
308 |
gatattgtg |
316 |
Q |
| |
|
||| ||||| |
|
|
| T |
33099384 |
gattttgtg |
33099376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 33072591 - 33072318
Alignment:
| Q |
9 |
aagagagcttcgggaattaaggttcatga-------tgatcctaaactgataaagagaagtatacaaaaacggaagaaaaggcagcagaaaaacgcagtg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||| || ||||| | |||| ||||||| ||||| || ||||| |||| | |
|
|
| T |
33072591 |
aagagagcttcgggaattaaggttcatgaatcatgatgatcctaaattgataaggaaaagtacagaaaa--ggaagaagaggcaacataaaaatgcagag |
33072494 |
T |
|
| Q |
102 |
aaatgggaagagagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggttagcaaatatagctgagaagattaatgatgagaaactg |
201 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
33072493 |
aaatgggaagagagggttcaatcaagggatcagttgaaggcagagaaacaacaaaaaaaggtttgcaaatatagctgagaggattaatgataagaaactg |
33072394 |
T |
|
| Q |
202 |
aggaagattgcaaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttcttaatggta |
277 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
33072393 |
aggaagattgcaaagagagagaagaagctattacggcctggatttgaaggtcgtaaggaaggttttcgtaatggta |
33072318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 3931473 - 3931197
Alignment:
| Q |
12 |
agagcttcgggaattaaggttcatgatgatcctaaactgataaagagaagtatacaaaaacggaagaaaaggcagcagaaaaacgcagtgaaatgggaag |
111 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||| || |||||| ||| | ||||| |||| ||||||||||| |
|
|
| T |
3931473 |
agagcttcaggaattaaggtccatgatgatcccaaactgataaagaaaagcatacataaggtgaagaagcagcaagaaaaaaatgcagagaaatgggaag |
3931374 |
T |
|
| Q |
112 |
agagggttcaaacaagggatcagttgaaggcagagaaacaactaaaaaaggttagcaaatatagctgagaagattaatgatgagaaactgaggaagattg |
211 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| ||| | ||||||| || ||||||||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
3931373 |
agagagttcaatcaagggatcagttgaaggcagagaagcaaa-agaaaaggtcagataatatagctgagaggattaatgataagaaaatgaggaagattg |
3931275 |
T |
|
| Q |
212 |
caaagagagagaagaaactattatagcctggatttgaacgtcgtaaggaaggatttcttaatggtatttctggctaac |
289 |
Q |
| |
|
||||||||||||| || |||||| ||| || |||||| |||| |||||||| ||| ||||| | | ||||||||||| |
|
|
| T |
3931274 |
caaagagagagaaaaagctattacggccgggctttgaaggtcgcaaggaaggttttattaatagcagttctggctaac |
3931197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University