View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5774-Insertion-2 (Length: 800)
Name: NF5774-Insertion-2
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 8 - 502
Target Start/End: Complemental strand, 40816397 - 40815891
Alignment:
| Q |
8 |
tatgtaagtttcagacaatatcaaaatagactcatgttacatggttcgattaaatttctaaatgtacaatacacacaaaataaattcaatatatagtaag |
107 |
Q |
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| T |
40816397 |
tatgtaagtttcagacaatatcaaaatagactcatgttacatggttcgattaaatttctaaatgtacaatacactcaaaataaattcaatata--gtaag |
40816300 |
T |
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| Q |
108 |
tatttttacatacaaattcgacaagatgatataaaattattttg---------------tatataacttttcattgtctatatactttttcattttatgt |
192 |
Q |
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| T |
40816299 |
tatttttacatacaaattcgacaagatgatataaaattattttgggaaaaataattttgtatataacttttcattgtctatatactttttcattttatgt |
40816200 |
T |
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| Q |
193 |
aaatggacttcttcactatatttttaacagataaataaactgaatagttttctacactaaaatagaaaaataaatttcataggtccccttaacccaatat |
292 |
Q |
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||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40816199 |
aaatggatttcttcactatatttttaacagataaataaagtggatagttttctacactaaaatagaaaaataaatttcataggtccccttaacccactat |
40816100 |
T |
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| Q |
293 |
aatcatatttgaggcaccaacgaaaattaaatatggatatctccatcaattatcccatctgactccgttgataaagcatataatttttaagaatatgtta |
392 |
Q |
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| T |
40816099 |
aattatatttgaggcaccaacgaaaattaaatatgaatatctctatcaattattccatctgactctcttgataaagcatataatttttaagaatatgtta |
40816000 |
T |
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| Q |
393 |
tttgannnnnnnnnnnnnnaaatcggatatcctccacgtgcaattgcagagactaattccttatgctttttgaaacccaaacagacgatagaatcttcct |
492 |
Q |
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| T |
40815999 |
tttg-tattttttttttttaaatcggatatcctccacgtacaattgcagagattaattccttatgctttttgagacccaaaatgacgacaaactcttcct |
40815901 |
T |
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| Q |
493 |
aaaaatttta |
502 |
Q |
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|||| ||||| |
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| T |
40815900 |
aaaagtttta |
40815891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 498 - 704
Target Start/End: Complemental strand, 40815340 - 40815134
Alignment:
| Q |
498 |
ttttaacgttgcggcatgcccaaagttgaatttgaacccaaaaccttagttaaactagaattttataaaggctcccatagaaaatatatataggtatagt |
597 |
Q |
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| T |
40815340 |
ttttaacgttgcgggatgcccaaagttaaatttgaacccaaaaccttagttaaactagaattttataaaggctcccatagaaaatatatataggtataat |
40815241 |
T |
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| Q |
598 |
aacaaagtaaatcttcgcggtatccattgtacctatgtacagtaggtttctatgtagtctgagggttcaaggccatgttatcaagatcagatgattcaga |
697 |
Q |
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| T |
40815240 |
aacaaagtaaatcttggcggtatccattgtacctatgtacaataggtttctatgtagtccgagggttcaaggtcatgttattaagatcagatgattcaga |
40815141 |
T |
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| Q |
698 |
tttcaac |
704 |
Q |
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||||||| |
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| T |
40815140 |
tttcaac |
40815134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 755 - 800
Target Start/End: Complemental strand, 40815087 - 40815042
Alignment:
| Q |
755 |
atatctacaatcctaactgaatctgatccaattccctatcgaccac |
800 |
Q |
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| T |
40815087 |
atatctacaatcctaactgaatctgatccaattccctatcgaccac |
40815042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 496 - 557
Target Start/End: Complemental strand, 33096843 - 33096782
Alignment:
| Q |
496 |
aattttaacgttgcggcatgcccaaagttgaatttgaacccaaaaccttagttaaactagaa |
557 |
Q |
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| T |
33096843 |
aattttaacgttgctgcacacccaaagttgaattcgaactcagaaccttagttaaattagaa |
33096782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 557
Target Start/End: Original strand, 2804542 - 2804609
Alignment:
| Q |
490 |
cctaaaaattttaacgttgcggcatgcccaaagttgaatttgaacccaaaaccttagttaaactagaa |
557 |
Q |
| |
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| T |
2804542 |
cctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagctagaa |
2804609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 537
Target Start/End: Original strand, 34210071 - 34210112
Alignment:
| Q |
496 |
aattttaacgttgcggcatgcccaaagttgaatttgaaccca |
537 |
Q |
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| T |
34210071 |
aattttaacgctgctgcatgcacaaagttgaatttgaaccca |
34210112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 557
Target Start/End: Complemental strand, 32534156 - 32534097
Alignment:
| Q |
498 |
ttttaacgttgcggcatgcccaaagttgaatttgaacccaaaaccttagttaaactagaa |
557 |
Q |
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| T |
32534156 |
ttttaacgttgttgcatgctcaaagctgaatttgaatccaaaaccttggttaagctagaa |
32534097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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