View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5774-Insertion-4 (Length: 710)

Name: NF5774-Insertion-4
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5774-Insertion-4
NF5774-Insertion-4
[»] chr6 (8 HSPs)
chr6 (8-576)||(32640989-32641560)
chr6 (383-576)||(32643250-32643439)
chr6 (385-465)||(24085315-24085395)
chr6 (385-471)||(18001300-18001386)
chr6 (643-707)||(32641627-32641691)
chr6 (399-474)||(3384899-3384974)
chr6 (645-696)||(32643138-32643189)
chr6 (385-438)||(17996659-17996712)
[»] chr5 (6 HSPs)
chr5 (385-576)||(8698962-8699149)
chr5 (386-474)||(19227027-19227115)
chr5 (415-474)||(40622529-40622588)
chr5 (385-464)||(511109-511188)
chr5 (385-461)||(5200266-5200342)
chr5 (643-679)||(8699208-8699244)
[»] chr7 (9 HSPs)
chr7 (385-576)||(9491495-9491687)
chr7 (385-575)||(47669695-47669884)
chr7 (385-474)||(47521472-47521561)
chr7 (385-474)||(27450200-27450289)
chr7 (396-471)||(16680946-16681021)
chr7 (396-471)||(17655182-17655257)
chr7 (389-451)||(19804409-19804471)
chr7 (385-438)||(11100413-11100466)
chr7 (652-696)||(9491754-9491798)
[»] chr2 (6 HSPs)
chr2 (385-576)||(40538895-40539080)
chr2 (385-474)||(36652967-36653056)
chr2 (385-468)||(6637621-6637705)
chr2 (385-474)||(16327480-16327569)
chr2 (669-710)||(36653285-36653326)
chr2 (669-710)||(39950715-39950756)
[»] chr3 (15 HSPs)
chr3 (389-576)||(42804494-42804677)
chr3 (385-474)||(50759287-50759376)
chr3 (385-576)||(30252627-30252817)
chr3 (385-474)||(48891996-48892085)
chr3 (385-474)||(16861242-16861330)
chr3 (385-474)||(17561846-17561935)
chr3 (385-474)||(44233190-44233279)
chr3 (384-476)||(48566293-48566385)
chr3 (385-474)||(6928598-6928687)
chr3 (385-474)||(49265849-49265938)
chr3 (385-461)||(41615757-41615833)
chr3 (643-710)||(30252854-30252921)
chr3 (643-688)||(42804714-42804759)
chr3 (665-710)||(4005192-4005240)
chr3 (669-710)||(49266154-49266195)
[»] chr4 (9 HSPs)
chr4 (384-474)||(8111312-8111402)
chr4 (385-474)||(46439485-46439574)
chr4 (385-469)||(50020178-50020262)
chr4 (387-474)||(50196807-50196894)
chr4 (387-464)||(72412-72489)
chr4 (506-576)||(10729606-10729676)
chr4 (506-576)||(10943375-10943445)
chr4 (650-696)||(13624297-13624343)
chr4 (445-474)||(50020263-50020292)
[»] chr1 (7 HSPs)
chr1 (385-471)||(51337387-51337473)
chr1 (385-474)||(47505810-47505897)
chr1 (385-474)||(35255910-35255999)
chr1 (385-474)||(45829053-45829142)
chr1 (385-474)||(47661339-47661428)
chr1 (497-576)||(49854635-49854715)
chr1 (643-689)||(49854774-49854820)
[»] chr8 (6 HSPs)
chr8 (385-474)||(35555069-35555158)
chr8 (385-474)||(40075194-40075283)
chr8 (389-474)||(20859499-20859586)
chr8 (390-474)||(39831240-39831324)
chr8 (384-474)||(52556-52647)
chr8 (416-474)||(34819118-34819176)
[»] scaffold0155 (2 HSPs)
scaffold0155 (497-576)||(12709-12789)
scaffold0155 (643-692)||(12601-12650)
[»] scaffold0219 (1 HSPs)
scaffold0219 (384-474)||(313-403)


Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Original strand, 32640989 - 32641560
Alignment:
Q  8 tagttgacgacgttagttccacataacaatttgatcttgaaatttggttctcaatgataccctccctacgatcctcagagtgatcttattgagatcctgc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32640989 tagttgacgacgttagttccacataacaatttgatcttgaaatttggttctcaatgataccctccctacgatcctcaaagtgatcttattgagatcctgc 32641088  T
Q  108 aaacaacgtggtttggctagtgggtactgaagaaaaccgggctatagtttcaccctatctgcttcgtacatctctaccatatggaaacacgtaacatagg 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32641089 aaacaacgtggtttggctagtcggtactgaagaaaaccgggctatagtttcaccctatctgcttcgtacatctctaccacatggaaacacgtaacatagg 32641188  T
Q  208 tggttgtagaccatatctcgcttttttcctagattgggagattgcaacccgaaataagacctccacttgaactaatacataagaggtatagtttggccat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||    
T  32641189 tggttgtagaccatatctcgcttttttcctagattgggagattgcaacccgaaataagacctccacttgaactaatacatgagacgtatagtttgggcat 32641288  T
Q  308 attgagtaaaaactaaagaaagaaaggtatgacgaggataaataagacctccgcttgaattaatatataagacgtatagtaaactgccgaagcgtcctga 407  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  32641289 attgagtaaaaaataaagaaagaaaggtatgacgaggataaataagacctccacttgaactaatatataagacgtatagtaaactgccgaagcgtcctga 32641388  T
Q  408 agtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaac--atgtacc--tgnnnnnnnnnnnnnnacgcataa 503  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||  || ||||  |               ||||||||    
T  32641389 agtcaaggcagaggcagtagcttcatttcct-aatctgtaatgtgtttcaaacacaaaatacaacatatataccttttttttttttttttttacgcataa 32641487  T
Q  504 tggttcaaatggcaaaacaaaattggctcattttaacaaacattgattaaccgaagaaactaatgaaccaatg 576  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  32641488 tggttcaaatggcaaaacaaaattggctcaatttaacaaacactgattaaacgaagaaactaatgaaccaatg 32641560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 383 - 576
Target Start/End: Complemental strand, 32643439 - 32643250
Alignment:
Q  383 atagtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaac--atgtacct 480  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  32643439 atagtaaactaccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgttttaaacacaaaacacaacatatgtacct 32643340  T
Q  481 gnnnnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcattttaacaaacattgattaaccgaagaaactaatgaaccaatg 576  Q
    |              |||||||||| || ||||| ||||| |||||||||| | ||||||||||| ||||||| ||||||||||||||||||||||    
T  32643339 g------ttttttttacgcataatgattaaaatgacaaaaaaaaattggctaaatttaacaaacaatgattaaacgaagaaactaatgaaccaatg 32643250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 24085315 - 24085395
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaa 465  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  24085315 agtaaactgccgaagcgtcctgaagccaaaacagaggcagtagcttcatttcctaaacctgtaatgtatttcaaacacaaa 24085395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 18001300 - 18001386
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 471  Q
    ||||||||||  ||| ||| ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  18001300 agtaaactgcataagtgtcatgaagccaaggcagaggcagtagcttcatttcctaaacttgtaatgtgtttcaaacacaaaacacaa 18001386  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 643 - 707
Target Start/End: Original strand, 32641627 - 32641691
Alignment:
Q  643 cgaaaagtaaaaaacaagtcataatcctactgctggtcctggtcctgctggtgcctcctcctcgg 707  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  32641627 cgaaaagtaaaaaacaagtcataatcctactgttggtcctggtcctactggtgcctcctcctcgg 32641691  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 399 - 474
Target Start/End: Complemental strand, 3384974 - 3384899
Alignment:
Q  399 gcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||||| ||| ||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  3384974 gcgtcctgaagccaatgcagaggcagtagcttcattttctgatcttgtaatgtgtttcaaacacaaaacacaacat 3384899  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 645 - 696
Target Start/End: Complemental strand, 32643189 - 32643138
Alignment:
Q  645 aaaagtaaaaaacaagtcataatcctactgctggtcctggtcctgctggtgc 696  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32643189 aaaagtaaaaaacaagtcctaatcctactgctggtcctggtcctgctggtgc 32643138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 17996659 - 17996712
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcct 438  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  17996659 agtaaactgccgaattgtcctgaagccaaggcagaggcagtagcttcatttcct 17996712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 7e-54; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 385 - 576
Target Start/End: Original strand, 8698962 - 8699149
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaac--atgtacctgn 482  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||     
T  8698962 agtaaactgtcgaagcgtcctgaagtcaaggcagaggcaatagcttcatttcctgaacctgtaatgtgtttcaaaaacaaaacacaacatatgtacctg- 8699060  T
Q  483 nnnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcattttaacaaacattgattaaccgaagaaactaatgaaccaatg 576  Q
                 |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  8699061 -----ttttttttacgcataatggttcaaatggaaaaacaaaattggctcaatttaacaaacactgattaaacgaagaaactaatgaaccaatg 8699149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 19227027 - 19227115
Alignment:
Q  386 gtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  19227027 gtaaactgccgaagcgtcctgaagccaaggcagaggcagtagcttcatttcataaacctttaatgtgtttcaaacacaaaacacaacat 19227115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 415 - 474
Target Start/End: Original strand, 40622529 - 40622588
Alignment:
Q  415 gcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40622529 gcagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacat 40622588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 385 - 464
Target Start/End: Original strand, 511109 - 511188
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaa 464  Q
    |||||||||||||||| |||||||| ||| ||| |||||||||||||||||||| ||| ||||||||||| |||||||||    
T  511109 agtaaactgccgaagcatcctgaagccaaagcaaaggcagtagcttcatttcctaaacatgtaatgtgttgcaaacacaa 511188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 385 - 461
Target Start/End: Complemental strand, 5200342 - 5200266
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaaca 461  Q
    ||||||||||| ||||||||||||| |||| ||||||||  | |||||||||||||||||| |||||||||||||||    
T  5200342 agtaaactgccaaagcgtcctgaagccaagacagaggcaacaacttcatttcctgaacctgcaatgtgtttcaaaca 5200266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 643 - 679
Target Start/End: Original strand, 8699208 - 8699244
Alignment:
Q  643 cgaaaagtaaaaaacaagtcataatcctactgctggt 679  Q
    |||||||||||||||||||| ||||||||||||||||    
T  8699208 cgaaaagtaaaaaacaagtcctaatcctactgctggt 8699244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 385 - 576
Target Start/End: Original strand, 9491495 - 9491687
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaac--atgtacctgn 482  Q
    |||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||     
T  9491495 agtaaactgctgaagcgtcctgaagccaatgcagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacatatgtacctg- 9491593  T
Q  483 nnnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcattttaacaaacattgattaaccgaagaaactaatgaaccaatg 576  Q
                 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | || |||||||||||||||||    
T  9491594 tttttatttttttacgcataatggttcaaatggcaaaacaaaattggctcaatttaacaaacactgattaaactaacaaactaatgaaccaatg 9491687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 385 - 575
Target Start/End: Original strand, 47669695 - 47669884
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaac--atgtacctgn 482  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||| |||     
T  47669695 agtaaactgccgaagcgtcctgaagccaaggcagaggcagtagattcatttcctgaacctgtaatgtgtttcaaacacaaaacagaacatatgtaactg- 47669793  T
Q  483 nnnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcattttaacaaacattg---attaaccgaagaaactaatgaaccaat 575  Q
                 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||   ||||| |||||||||||||||||||||    
T  47669794 -----ttttttttacgcataatggttcaaatggcaaaacaaaattggctcatattaacaaacactgattattaaacgaagaaactaatgaaccaat 47669884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 385 - 474
Target Start/End: Original strand, 47521472 - 47521561
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||||||| |||||||||||||| |||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47521472 agtaaactgctgaagcgtcctgaagccaaaacagagacagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 47521561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 385 - 474
Target Start/End: Original strand, 27450200 - 27450289
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||| ||||||||||||||| |||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||    
T  27450200 agtaaactgtcgaagcgtcctgaagccaagacagaggcaggaacttcatttcctgaacctataatgtgtttcaaacacaaaacacaacat 27450289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 16681021 - 16680946
Alignment:
Q  396 gaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 471  Q
    |||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16681021 gaagcgtcctgaagccaggacagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 16680946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 17655257 - 17655182
Alignment:
Q  396 gaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 471  Q
    |||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17655257 gaagcgtcctgaagccaggacagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 17655182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 389 - 451
Target Start/End: Complemental strand, 19804471 - 19804409
Alignment:
Q  389 aactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgt 451  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||    
T  19804471 aactgccgaagcgtcctgaagccaagacagaggcagcagcttcatttcttgaacctgcaatgt 19804409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 11100466 - 11100413
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcct 438  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  11100466 agtaaactgccgaattgtcctgaagccaaggcagaggcagtagcttcatttcct 11100413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 652 - 696
Target Start/End: Original strand, 9491754 - 9491798
Alignment:
Q  652 aaaaacaagtcataatcctactgctggtcctggtcctgctggtgc 696  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||    
T  9491754 aaaaacaagtcctaatcctactgctggtcatggtcctgctggtgc 9491798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 385 - 576
Target Start/End: Complemental strand, 40539080 - 40538895
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacatgtacctgnnn 484  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||       
T  40539080 agtaaactgtcgaagcgtcctgaagccaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaaaac-atatgtacctg--- 40538985  T
Q  485 nnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcattttaacaaacattgattaaccgaagaaactaatgaaccaatg 576  Q
               ||| |||||||||||| |||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||    
T  40538984 --ttttttttcacgaataatggttcaattggcaaaacaaaattggctcatgttaacaaacacttattaaacgaagaaactaatgaaccaatg 40538895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 385 - 474
Target Start/End: Original strand, 36652967 - 36653056
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36652967 agtaaactgccaaagcgtcctgaagccaagacagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 36653056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 385 - 468
Target Start/End: Original strand, 6637621 - 6637705
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaa-cacaaaaca 468  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |||||||||    
T  6637621 agtaaactgccgaagcgtcctgaagtcaagacagaggcagtaggttcatttcctgaacctgtaatgtgcttcaaatcacaaaaca 6637705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 385 - 474
Target Start/End: Original strand, 16327480 - 16327569
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||| | | ||||||| ||| ||| | ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  16327480 agtaaactgtcaatgcgtcctcaagccaatgtagaggcagtagcttcattttctgatcgtgtaatgtgtttcaaacacaaaacacaacat 16327569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 669 - 710
Target Start/End: Original strand, 36653285 - 36653326
Alignment:
Q  669 ctactgctggtcctggtcctgctggtgcctcctcctcggcct 710  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  36653285 ctactactggtcctggtcctgctggtgcctcctcctcggcct 36653326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 710
Target Start/End: Complemental strand, 39950756 - 39950715
Alignment:
Q  669 ctactgctggtcctggtcctgctggtgcctcctcctcggcct 710  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  39950756 ctactactggtcctgatcctgctggtgcctcctcctcggcct 39950715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 389 - 576
Target Start/End: Original strand, 42804494 - 42804677
Alignment:
Q  389 aactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaac--atgtacctgnnnnn 486  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||         
T  42804494 aactgccgaagcgtcctgaagccaaagcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacatatgtacctg----- 42804588  T
Q  487 nnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcattttaacaaacattgattaaccgaagaaactaatgaaccaatg 576  Q
             || ||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| ||| |||||||||||||    
T  42804589 -ttttttttactcattatggttcaaatggcaaaacaaaattggctcaatttaacaaacactgattaaacgaacaaagtaatgaaccaatg 42804677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 50759376 - 50759287
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  50759376 agtaaactgccgaagcgtcctgaagccaaggcagaggcagtagcttcatttcatgaacctgtaatgtgtttcaaacacaaaacacaacat 50759287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 385 - 576
Target Start/End: Original strand, 30252627 - 30252817
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaa--ggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat--gtacct 480  Q
    |||||| |||||||||||||| ||| |||  |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||    
T  30252627 agtaaattgccgaagcgtcctaaagccaaaaggcaaaggcaatagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacatatgtacct 30252726  T
Q  481 gnnnnnnnnnnnnnnacgcataatggttcaaatggcaaaacaaaattggctcattttaacaaacattgattaaccgaagaaactaatgaaccaatg 576  Q
                   || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||    
T  30252727 -----ttttttttttacacataatggttcaaatggcaaaacaaaattggctcaatttaacaaacactgattaaacgaacaaactaatgaaccaatg 30252817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 48892085 - 48891996
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48892085 agtaaactgccgaagcgtcccgaagccaaggcagaggcagtagcttcatttcctgaacctctaatgtgtttcaaacacaaaacacaacat 48891996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 385 - 474
Target Start/End: Original strand, 16861242 - 16861330
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16861242 agtaaactgccgaagcgtcctgaag-caagatagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 16861330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 385 - 474
Target Start/End: Original strand, 17561846 - 17561935
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17561846 agtaaactgccgaagtgtcctgaagccaagacagagacagtagcttcatttcctgaatctgtaatgtgtttcaaacacaaaacacaacat 17561935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 44233279 - 44233190
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44233279 agtaaactgtcgatgcgtcctgaagccaagacagaggcagtagcttcatttcctgaacctgtaatgtatttcaaacacaaaacacaacat 44233190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 384 - 476
Target Start/End: Complemental strand, 48566385 - 48566293
Alignment:
Q  384 tagtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacatgt 476  Q
    |||| |||| |||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  48566385 tagttaactaccgaagcgtcctgaagccaaggtagaggcagtagcttcatttcctaaacttgtaatgtgtttcaaacacaaaacacaacatgt 48566293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 6928687 - 6928598
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||||  |||||| ||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6928687 agtaaacaaccgaagtgtcgtgaagccaaagcagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacat 6928598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 385 - 474
Target Start/End: Original strand, 49265849 - 49265938
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||||||| |||||||| ||||| |||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49265849 agtaaactgcagaagcgtcttgaagccaaaacagaggtactagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 49265938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 385 - 461
Target Start/End: Complemental strand, 41615833 - 41615757
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaaca 461  Q
    ||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||||    
T  41615833 agtaaactgccgaagcgtcctgaagccaagacagaggcagcagcttcatttcctgaacctgcaatgtgtttcaaaca 41615757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 643 - 710
Target Start/End: Original strand, 30252854 - 30252921
Alignment:
Q  643 cgaaaagtaaaaaacaagtcataatcctactgctggtcctggtcctgctggtgcctcctcctcggcct 710  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  30252854 cgaaaagtaaaaaacaagtcctaatcctacagctggtcctggtcctgctggtgcctcctcctcggcct 30252921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 643 - 688
Target Start/End: Original strand, 42804714 - 42804759
Alignment:
Q  643 cgaaaagtaaaaaacaagtcataatcctactgctggtcctggtcct 688  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  42804714 cgaaaagtaaaaaacaagtcctaatcctactgctggtcctggtcct 42804759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 665 - 710
Target Start/End: Original strand, 4005192 - 4005240
Alignment:
Q  665 aatcctactgctggtcctggtcctgc---tggtgcctcctcctcggcct 710  Q
    ||||||||| ||||||||||||||||   ||||||||||||||||||||    
T  4005192 aatcctactactggtcctggtcctgctgatggtgcctcctcctcggcct 4005240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 710
Target Start/End: Original strand, 49266154 - 49266195
Alignment:
Q  669 ctactgctggtcctggtcctgctggtgcctcctcctcggcct 710  Q
    ||||| |||||||||||| ||| |||||||||||||||||||    
T  49266154 ctactactggtcctggtcatgccggtgcctcctcctcggcct 49266195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 384 - 474
Target Start/End: Complemental strand, 8111402 - 8111312
Alignment:
Q  384 tagtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8111402 tagtaaactgccgaagcgtcctgaagccaagtcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 8111312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 46439574 - 46439485
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  46439574 agtaaacagccgaagcgtcctgaagccaaagcagaggcagtagcttcatttcctaaacctataatgtgtttcaaacacaaaacacaacat 46439485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 385 - 469
Target Start/End: Original strand, 50020178 - 50020262
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacac 469  Q
    |||||||||| |||||||||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50020178 agtaaactgctgaagcgtcctgaaaccaagacagaggcggtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacac 50020262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 50196894 - 50196807
Alignment:
Q  387 taaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||| ||||||||||||||| |||| |||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  50196894 taaactgtcgaagcgtcctgaagccaagacagaggtaggagcttcatttcctgaacctgcaatgtgtttcaaacacaaaatacaacat 50196807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 387 - 464
Target Start/End: Complemental strand, 72489 - 72412
Alignment:
Q  387 taaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaa 464  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||||||| || ||| |||||||||||||||||||||    
T  72489 taaactgtcgaagcgtcctgaagccaaagcagaggcagtagcttcatttactaaacttgtaatgtgtttcaaacacaa 72412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 576
Target Start/End: Original strand, 10729606 - 10729676
Alignment:
Q  506 gttcaaatggcaaaacaaaattggctcattttaacaaacattgattaaccgaagaaactaatgaaccaatg 576  Q
    |||||||||||||||||||||||||||| || || ||||||| ||||| |||| |||||||||||||||||    
T  10729606 gttcaaatggcaaaacaaaattggctcaattcaagaaacattaattaaacgaacaaactaatgaaccaatg 10729676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 576
Target Start/End: Original strand, 10943375 - 10943445
Alignment:
Q  506 gttcaaatggcaaaacaaaattggctcattttaacaaacattgattaaccgaagaaactaatgaaccaatg 576  Q
    |||||||||||||||||||||||||||| || || ||||||| ||||| |||| |||||||||||||||||    
T  10943375 gttcaaatggcaaaacaaaattggctcaattcaagaaacattaattaaacgaacaaactaatgaaccaatg 10943445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 696
Target Start/End: Original strand, 13624297 - 13624343
Alignment:
Q  650 taaaaaacaagtcataatcctactgctggtcctggtcctgctggtgc 696  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  13624297 taaaaaacaagtcataatcatactgcttgtcctagtcctgctggtgc 13624343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 474
Target Start/End: Original strand, 50020263 - 50020292
Alignment:
Q  445 gtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||||||||||||||||||||||||    
T  50020263 gtaatgtgtttcaaacacaaaacacaacat 50020292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 51337473 - 51337387
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaa 471  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51337473 agtaaactgccgaagtgtcctgaagccaaggcagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaa 51337387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 47505897 - 47505810
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  47505897 agtaaactgccgaagcgtcctgaagccaagacagaggcagtagcttcatttcctgaacctgtaatgtgtttcaa--acaaaacacaacat 47505810  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 385 - 474
Target Start/End: Original strand, 35255910 - 35255999
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  35255910 agtaaactgccgaagcatcctgaagccaaggcagaggcaatagcttcatttgttgaacctgtaatttgtttcaaacacaaaacacaacat 35255999  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 45829142 - 45829053
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||||||  |||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45829142 agtaaactgttgaagcgtcctgaagccaaatcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacaaaaaacacaacat 45829053  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 47661428 - 47661339
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||| || ||||||||||||||| ||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  47661428 agtaaattgtcgaagcgtcctgaagccaaagcagaggcagtagcttcattttctaaacctgtaatgtgtttcaaacacaaaacacaacat 47661339  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 497 - 576
Target Start/End: Original strand, 49854635 - 49854715
Alignment:
Q  497 cgcataatg-gttcaaatggcaaaacaaaattggctcattttaacaaacattgattaaccgaagaaactaatgaaccaatg 576  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||    
T  49854635 cgcataatgtgttcaaatgacaaaacaaaattggctcaatttaacaaacactgattaaacgaacaaactaatgaaccaatg 49854715  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 643 - 689
Target Start/End: Original strand, 49854774 - 49854820
Alignment:
Q  643 cgaaaagtaaaaaacaagtcataatcctactgctggtcctggtcctg 689  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  49854774 cgaaaagtaagaaacaagtcctaatcctactgctggtcctggtcctg 49854820  T

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Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 35555158 - 35555069
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35555158 agtaaactgtcgaagcgtcctgaagccaaagcagaggtagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacat 35555069  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 385 - 474
Target Start/End: Original strand, 40075194 - 40075283
Alignment:
Q  385 agtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||||| ||||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40075194 agtaaacttccgaagcgttctgaagccaaagcagaggcagtagcttcatttcctaaacctgtaatgtgtttcaaacacaaaacacaacat 40075283  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 20859586 - 20859499
Alignment:
Q  389 aactgccgaagcgtcctgaagtcaaggca--gaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||||||||||||||| |||| ||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20859586 aactgccgaagcgtcctgaagccaagacaaagaggcagtagcttcatttcctgaacctgcaatgtgtttcaaacacaaaacacaacat 20859499  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 39831240 - 39831324
Alignment:
Q  390 actgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||||||||||||||||||| |||| |||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||    
T  39831240 actgccgaagcgtcctgaagccaagacagaggcattaacttcatttccggaacctgtaatgtgtttcaaacacaaaacacaacat 39831324  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 384 - 474
Target Start/End: Complemental strand, 52647 - 52556
Alignment:
Q  384 tagtaaactgcc-gaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||| ||||||| |||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  52647 tagttaactgcctgaagcgtcctgaagccaagacagaggcagtagctttatttcctaaacctgtaatgtgtttcaaacacaaaacacaacat 52556  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 416 - 474
Target Start/End: Original strand, 34819118 - 34819176
Alignment:
Q  416 cagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  34819118 cagaggcagtagcttcatttcctaaacctgtaatatgtttcaaacacaaaacacaacat 34819176  T

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Target: scaffold0155 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 497 - 576
Target Start/End: Complemental strand, 12789 - 12709
Alignment:
Q  497 cgcataatg-gttcaaatggcaaaacaaaattggctcattttaacaaacattgattaaccgaagaaactaatgaaccaatg 576  Q
    ||||||||| |||||||||| ||||||||||||||||| || |||||| ||||||||| |||| |||||||||||||||||    
T  12789 cgcataatgtgttcaaatggtaaaacaaaattggctcaattaaacaaagattgattaaacgaacaaactaatgaaccaatg 12709  T

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Target: scaffold0155; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 643 - 692
Target Start/End: Complemental strand, 12650 - 12601
Alignment:
Q  643 cgaaaagtaaaaaacaagtcataatcctactgctggtcctggtcctgctg 692  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  12650 cgaaaagtaaaaaataagtcctaatcctactgctggtcctggtcgtgctg 12601  T

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Target: scaffold0219 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 384 - 474
Target Start/End: Complemental strand, 403 - 313
Alignment:
Q  384 tagtaaactgccgaagcgtcctgaagtcaaggcagaggcagtagcttcatttcctgaacctgtaatgtgtttcaaacacaaaacacaacat 474  Q
    |||| |||| |||| || |||||||| ||| |||||| ||| | |||||||| |||| |||||||||||||| ||||||||||||||||||    
T  403 tagttaactaccgatgcatcctgaagccaatgcagagacagaaacttcattttctgatcctgtaatgtgtttaaaacacaaaacacaacat 313  T

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