View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5774-Insertion-5 (Length: 703)
Name: NF5774-Insertion-5
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 347
Target Start/End: Original strand, 3322999 - 3323337
Alignment:
| Q |
8 |
ctcctcctccacttccacccgactgcgtccccttttaatgaataagtcgtcaatatagtctctaaaataataggataagacaatttaagtatgacttata |
107 |
Q |
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| T |
3322999 |
ctcctcctccacttccacccaactgcgtccccttttaatgaataagtcgtcaatttagtctctataataataggatcagacaatttaagtatgatttata |
3323098 |
T |
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| Q |
108 |
tttagttttggtgtcacc-annnnnnnncatgtaatcaactcagttgtgttatatagcaagagactttttgggtgaattctcgcttaacaactcatttct |
206 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3323099 |
tttagttttggtgtcaccgattttttttcatgtaatcaactcagttgtgttata--gcaagagactttttgggtgaattctcgcttaacaactcatttct |
3323196 |
T |
|
| Q |
207 |
atataatcaattaaattgttacgtaattatctcacttgtcacatcgtagaaaatcaacctcaaatgatgcataggtggagaaaatgttggatatttaaaa |
306 |
Q |
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| T |
3323197 |
atataatcaattaaattgttacgtaattatctcacttgtcacatcgtagaaaatcaacctcaaatgatgcataggtggagaaaatgttggatatttaaaa |
3323296 |
T |
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| Q |
307 |
gttggaataccaaaattgtgaataatgtaaaactagggaac |
347 |
Q |
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| T |
3323297 |
gttggaataccaaaattgtgaataatgtaaaactagggaac |
3323337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 410 - 703
Target Start/End: Original strand, 3323400 - 3323693
Alignment:
| Q |
410 |
ccagaatcacattagtatgtacaagataatttctaggaccaataatatgatttgttaattttaagaaannnnnnngactcctgaaatcaaggaccaaagt |
509 |
Q |
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| T |
3323400 |
ccagaatcacattagtatgtacaagataatttctaggaccaataatatgatttgttaattttaagaaatttttttgactcctgaaatcaaggaccaaagt |
3323499 |
T |
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| Q |
510 |
tggtgaatcacacaattatgaaattctaattcatatttgtgataaaacaaatgttccatttgcttggatataagtcacagtgtgaaaatttacttacttc |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3323500 |
tggtgaatcacacaattatgaaattctaattcatatttgtgataaaacaaatgttccatttgcttggatataagtcacagtgtgaaaatttacttacttc |
3323599 |
T |
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| Q |
610 |
atataatgatgagtgtgtataaagcattttcttcaaagccttcccatcccattctatagagaactcttgtgcaatatcatataataaccctatc |
703 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3323600 |
atataatgatgggtgtgtataaagcattttcttcaaagccttaccatcccattctatagagaactcttgtgcaatatcatataataaccttatc |
3323693 |
T |
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