View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5774-Insertion-6 (Length: 664)

Name: NF5774-Insertion-6
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5774-Insertion-6
NF5774-Insertion-6
[»] chr2 (5 HSPs)
chr2 (8-288)||(27750454-27750742)
chr2 (331-462)||(27750785-27750916)
chr2 (545-664)||(27750999-27751118)
chr2 (383-462)||(45391914-45391993)
chr2 (260-292)||(45391828-45391860)
[»] chr3 (9 HSPs)
chr3 (390-462)||(10511119-10511191)
chr3 (391-462)||(52737922-52737993)
chr3 (388-459)||(782930-782999)
chr3 (394-462)||(10514448-10514516)
chr3 (383-462)||(27825779-27825859)
chr3 (390-459)||(40131912-40131981)
chr3 (391-462)||(35240250-35240321)
chr3 (390-448)||(10661849-10661907)
chr3 (390-425)||(4607446-4607481)
[»] chr8 (2 HSPs)
chr8 (385-462)||(29908111-29908188)
chr8 (259-292)||(29907944-29907977)
[»] chr6 (3 HSPs)
chr6 (406-461)||(24249697-24249752)
chr6 (390-459)||(4555649-4555716)
chr6 (390-438)||(9231514-9231562)
[»] chr1 (6 HSPs)
chr1 (395-462)||(29850671-29850738)
chr1 (385-462)||(9905878-9905956)
chr1 (385-462)||(9908269-9908347)
chr1 (259-292)||(26231117-26231150)
chr1 (592-643)||(26653212-26653263)
chr1 (259-290)||(29849986-29850017)
[»] chr4 (1 HSPs)
chr4 (399-462)||(21214891-21214954)
[»] chr7 (1 HSPs)
chr7 (391-462)||(35130517-35130589)
[»] chr5 (5 HSPs)
chr5 (383-461)||(27405392-27405470)
chr5 (391-462)||(41326294-41326365)
chr5 (390-425)||(15424613-15424648)
chr5 (390-425)||(41949427-41949462)
chr5 (390-425)||(41951825-41951860)
[»] scaffold0017 (1 HSPs)
scaffold0017 (395-462)||(182941-183009)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 27750454 - 27750742
Alignment:
Q  8 aaaatttcaccaaatgagttttggggtcctcatgatccattctcactaacggattagcttacaggatttgcagaactcccatcttaatttcaattttcct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27750454 aaaatttcaccaaatgagttttggggtcctcatgatccattctcactaacggattagcttacaggatttgcagaactcccatcttaatttcaattttcct 27750553  T
Q  108 ttaattgggtcctagcctatgaatatgtgctagttttctttgactgttgatgtccatt--ctcactaact------gtgagatcttcttgattttccatg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     | |   |      ||||||||||||||||||||||||    
T  27750554 ttaattgggtcctagcctatgaatatgtgctagttttctttgactgttgatgttcatttgtggagttggtgcttgagtgagatcttcttgattttccatg 27750653  T
Q  200 ttttcttctcgtgtgtcagaattattcacaaaaagtataaatgaaatgtatataagaaaatgttatgaaacatggcatccatggatgaa 288  Q
    ||||||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27750654 ttttcttccggtatgtcagaattattcacaaaaattataaatgaaatgtatataagaaaatgttatgaaacatggcatccatggatgaa 27750742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 331 - 462
Target Start/End: Original strand, 27750785 - 27750916
Alignment:
Q  331 ctatatgttctatattgtatattgatagtaaagactaaagagtgatattacatgaattgtcccactaatggggtggttacaactatatatactacaatag 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  27750785 ctatatgttctatattgtatattgatagtaaagactaaagagtgatattacgtgaattgtcccactaatgaggtggttacaactatatatactactatag 27750884  T
Q  431 gactaatactacttgtaagtaaactatatctc 462  Q
    ||||||||||||||||||||||||||||||||    
T  27750885 gactaatactacttgtaagtaaactatatctc 27750916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 545 - 664
Target Start/End: Original strand, 27750999 - 27751118
Alignment:
Q  545 cttttaatggctgacaagaaaaataaacacttaatcgggctataatctcctcttatttcaattatacattcacctatcgcccttcatagatcttgatata 644  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27750999 cttttaatggctgaaaagaaaagtaaacacttaatcgggctataaactcctcttatttcaattatacattcacctatcgcccttcatagatcttgatata 27751098  T
Q  645 gaaatgataatgggtgatca 664  Q
    ||| ||||||||||||||||    
T  27751099 gaactgataatgggtgatca 27751118  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 383 - 462
Target Start/End: Original strand, 45391914 - 45391993
Alignment:
Q  383 tgaattgtcccactaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatatctc 462  Q
    ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||| |||| | |||||||||||||    
T  45391914 tgaattgacccactaatggggtggttacaactatatatactactctaggactaatactaattgtgactaaactatatctc 45391993  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 45391828 - 45391860
Alignment:
Q  260 tgttatgaaacatggcatccatggatgaaggag 292  Q
    |||||||||||||||||||||||||||||||||    
T  45391828 tgttatgaaacatggcatccatggatgaaggag 45391860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 10511119 - 10511191
Alignment:
Q  390 tcccactaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatatctc 462  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||    
T  10511119 tcccactaatggggtggttacaactatatatattactatagaactaatactacttgtaactaaactatatctc 10511191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 52737922 - 52737993
Alignment:
Q  391 cccactaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatatctc 462  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||| |  |||||||||||||    
T  52737922 cccactaatggggtggttacaactatatatactactctaggactaatactacttgaagctaaactatatctc 52737993  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 782930 - 782999
Alignment:
Q  388 tgtcccactaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatat 459  Q
    ||||||||| |||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||    
T  782930 tgtcccacttatggggtggttacaactatatatactaca--cggactaatactacttgtaactaaactatat 782999  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 394 - 462
Target Start/End: Original strand, 10514448 - 10514516
Alignment:
Q  394 actaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatatctc 462  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||| ||||||||    
T  10514448 actaatggggtggttacaactatatatactactatagaactaatactatttgtaactaaattatatctc 10514516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 383 - 462
Target Start/End: Original strand, 27825779 - 27825859
Alignment:
Q  383 tgaattgtcccactaatggggtggttacaactatatatactacaataggacta-atactacttgtaagtaaactatatctc 462  Q
    ||||||| |||||||||||||||| |||||||||||||||||| |||||||||  ||||||||| |  |||||||||||||    
T  27825779 tgaattgacccactaatggggtggctacaactatatatactactataggactatttactacttgaagttaaactatatctc 27825859  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 459
Target Start/End: Complemental strand, 40131981 - 40131912
Alignment:
Q  390 tcccactaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatat 459  Q
    |||||||||| ||||| ||||||||||||||||||| |||||| |||| || ||||||| ||||||||||    
T  40131981 tcccactaatagggtgattacaactatatatactactataggattaatgctgcttgtaactaaactatat 40131912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 35240321 - 35240250
Alignment:
Q  391 cccactaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatatctc 462  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||   || | |||||||||||||    
T  35240321 cccactaatggggtggttacaactatatatactactctagaactaatactaaccgtgactaaactatatctc 35240250  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 10661849 - 10661907
Alignment:
Q  390 tcccactaatggggtggttacaactatatatactacaataggactaatactacttgtaa 448  Q
    |||||||||||||||||||||||||||||||| ||  |||| | |||||||||||||||    
T  10661849 tcccactaatggggtggttacaactatatataataatatagaagtaatactacttgtaa 10661907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 425
Target Start/End: Complemental strand, 4607481 - 4607446
Alignment:
Q  390 tcccactaatggggtggttacaactatatatactac 425  Q
    ||||||||||||||| ||||||||||||||||||||    
T  4607481 tcccactaatggggttgttacaactatatatactac 4607446  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 385 - 462
Target Start/End: Original strand, 29908111 - 29908188
Alignment:
Q  385 aattgtcccactaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatatctc 462  Q
    ||||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||    
T  29908111 aattgtcccactaatgaagtggttacaactatatacactactataggactaatactacttgtaactaacctatatctc 29908188  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 29907944 - 29907977
Alignment:
Q  259 atgttatgaaacatggcatccatggatgaaggag 292  Q
    |||||||||||||||| |||||||||||||||||    
T  29907944 atgttatgaaacatggtatccatggatgaaggag 29907977  T

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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 406 - 461
Target Start/End: Complemental strand, 24249752 - 24249697
Alignment:
Q  406 gttacaactatatatactacaataggactaatactacttgtaagtaaactatatct 461  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  24249752 gttacaactatatatactactataggactaatgctacttgtaagtaaactatatct 24249697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 459
Target Start/End: Complemental strand, 4555716 - 4555649
Alignment:
Q  390 tcccactaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatat 459  Q
    ||||||| ||| ||||||||||||||||||||||||   ||||||| |||||||||||| ||||||||||    
T  4555716 tcccacttatgaggtggttacaactatatatactac--caggactagtactacttgtaactaaactatat 4555649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 9231562 - 9231514
Alignment:
Q  390 tcccactaatggggtggttacaactatatatactacaataggactaata 438  Q
    |||| |||||| ||||| |||||||||||||||||| ||| ||||||||    
T  9231562 tccctctaatgaggtggctacaactatatatactactatatgactaata 9231514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 395 - 462
Target Start/End: Original strand, 29850671 - 29850738
Alignment:
Q  395 ctaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatatctc 462  Q
    ||||||||||||||||||||||||||||||| |||  | ||||||||||||||| |||||||||||||    
T  29850671 ctaatggggtggttacaactatatatactactataaaattaatactacttgtaactaaactatatctc 29850738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 385 - 462
Target Start/End: Original strand, 9905878 - 9905956
Alignment:
Q  385 aattgtcccactaatggggtggttacaactatatatactacaataggacta-atactacttgtaagtaaactatatctc 462  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||||||||  ||||||||| |  |||||||||||||    
T  9905878 aattgacccactaatggggtggctacaactatatatactactataggactatttactacttgaagctaaactatatctc 9905956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 385 - 462
Target Start/End: Original strand, 9908269 - 9908347
Alignment:
Q  385 aattgtcccactaatggggtggttacaactatatatactacaataggacta-atactacttgtaagtaaactatatctc 462  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||||||||  ||||||||| |  |||||||||||||    
T  9908269 aattgacccactaatggggtggctacaactatatatactactataggactatttactacttgaagctaaactatatctc 9908347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 26231117 - 26231150
Alignment:
Q  259 atgttatgaaacatggcatccatggatgaaggag 292  Q
    ||||||||||||||||||||||||||||||||||    
T  26231117 atgttatgaaacatggcatccatggatgaaggag 26231150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 26653212 - 26653263
Alignment:
Q  592 tcctcttatttcaattatacattcacctatcgcccttcatagatcttgatat 643  Q
    |||| ||||| ||||||||| |||||||||| |||||||| |||||||||||    
T  26653212 tccttttattccaattataccttcacctatcacccttcatggatcttgatat 26653263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 290
Target Start/End: Original strand, 29849986 - 29850017
Alignment:
Q  259 atgttatgaaacatggcatccatggatgaagg 290  Q
    ||||||||||||||||||||||||||||||||    
T  29849986 atgttatgaaacatggcatccatggatgaagg 29850017  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 399 - 462
Target Start/End: Complemental strand, 21214954 - 21214891
Alignment:
Q  399 tggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatatctc 462  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||| |  |||||||||||||    
T  21214954 tggggtggttacaactatatatactactataggactagtactacttgaagctaaactatatctc 21214891  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 35130589 - 35130517
Alignment:
Q  391 cccactaatggggtggttacaactatatatactacaataggactaatac-tacttgtaagtaaactatatctc 462  Q
    |||||||||||||||||||||||||||||||||||  |||||||| ||| |||||| |  |||||||||||||    
T  35130589 cccactaatggggtggttacaactatatatactactctaggactagtacttacttgaagttaaactatatctc 35130517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 461
Target Start/End: Original strand, 27405392 - 27405470
Alignment:
Q  383 tgaattgtcccactaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatatct 461  Q
    ||||||| |||| ||||| |||| |||||||||||||||||||  |||||||| ||||||||| |  ||||||||||||    
T  27405392 tgaattgacccattaatgaggtgattacaactatatatactactctaggactagtactacttgaagctaaactatatct 27405470  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 41326294 - 41326365
Alignment:
Q  391 cccactaatggggtggttacaactatatatactacaataggactaatactacttgtaagtaaactatatctc 462  Q
    |||||||||||| |||||||||| ||||||||||| | | ||||||||||| ||||   |||||||||||||    
T  41326294 cccactaatgggatggttacaaccatatatactactacaagactaatactaattgtgtctaaactatatctc 41326365  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 425
Target Start/End: Original strand, 15424613 - 15424648
Alignment:
Q  390 tcccactaatggggtggttacaactatatatactac 425  Q
    ||||||||||||||| ||||||||||||||||||||    
T  15424613 tcccactaatggggttgttacaactatatatactac 15424648  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 425
Target Start/End: Original strand, 41949427 - 41949462
Alignment:
Q  390 tcccactaatggggtggttacaactatatatactac 425  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41949427 tcccactaatggggttgttacaactatatatactac 41949462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 425
Target Start/End: Original strand, 41951825 - 41951860
Alignment:
Q  390 tcccactaatggggtggttacaactatatatactac 425  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41951825 tcccactaatggggttgttacaactatatatactac 41951860  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 183009 - 182941
Alignment:
Q  395 ctaatggggtggttacaactatatatactacaataggactaatact-acttgtaagtaaactatatctc 462  Q
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T  183009 ctaatgaggtggctacaactatatatactactataagactaatgctaacttgtaagtaacctttatctc 182941  T

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