View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5774_high_1 (Length: 1124)
Name: NF5774_high_1
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 625; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 10 - 716
Target Start/End: Original strand, 44764009 - 44764715
Alignment:
| Q |
10 |
acatcatcatcgttaaggagcttgttgttatcgaatgacaaacaataattagcccaaacacttctcctgcaaataaaatgagacgaatttacaaaataac |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44764009 |
acatcatcatcgttaaggagcttgttgttatcgaatgacaaacaataattagcccaaacacttctcctgcaaataaaatgagacgaatttacaaaataac |
44764108 |
T |
|
| Q |
110 |
tttacactgtcggtgtgtaataattaaattgaaatcatattacaccagtttttgcataaaataagaaatcaaaatattaaaacagaacccaatgaatgag |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44764109 |
tttacactgtcggtgtgtaataattaaattgaaatcatattacaccagtttttgtataaaataagaaatcaaaatattaaaacaaaacccaatgaatgag |
44764208 |
T |
|
| Q |
210 |
aaactgaccaagaaatatggcggtgacccatactagattgttccatgtaattaaccttcttcttgatagcaagtttcaaatccttgagcgttgccgtatt |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44764209 |
aaactgaccaagaaatatggcggtgacccatactagattgttccatgtaattaaccttcttcttgatagcaagtttcaaatccttgagcgttgccgtatt |
44764308 |
T |
|
| Q |
310 |
cattagaatcacatcaaacgaggttgtatccaatttcaaaactgtaattcgcattgcactacccaattcgagtccaatgagagtttccacatcttccagg |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44764309 |
cattagaatcacatcaaacgaggttgtatccaatttcaaaactgtaattcgcattgcactacccaattcgagtccaatgagagtttccacatcttccagg |
44764408 |
T |
|
| Q |
410 |
gttggattcttcggtacatctgcgagtattggatcctccaataatgctttcaacaccttcaccttcttcaaactgctcttgtattccgcaccttctccca |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
44764409 |
gttggattcttcggtacatctgcgagtattggatcctccaataatgctttcaacaccttcgccttcttcaaaccgctcttgtattccgcaccttctccca |
44764508 |
T |
|
| Q |
510 |
tctcatcgcaaaataaccaaattcaaacgcaaaaattattttgatatgagctacttaatttttaatatcaatatannnnnnncatactgacnnnnnnntt |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || |
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| T |
44764509 |
tctcatcgcaaaataaccaaattcaaacgcaaaaattattttgatatgagctccttaatttttaatatcaatattttttttttctactgacaaaaaaatt |
44764608 |
T |
|
| Q |
610 |
gttacaagaaatagaactcattttctaaacaattcgtttggggtggattttattaactatttgaactcaatttcttagttaatatcaacatgagatttct |
709 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44764609 |
gttacaagaaatagaactcattttctaaacaattcgtttagggtggattttattaactatttgaactcaatttcttagttaatatcaacatgagttttct |
44764708 |
T |
|
| Q |
710 |
tactagg |
716 |
Q |
| |
|
||||||| |
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|
| T |
44764709 |
tactagg |
44764715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 199 - 581
Target Start/End: Original strand, 28357697 - 28358077
Alignment:
| Q |
199 |
caatgaatgagaaactgaccaagaaatatggcggtgacccatactagattgttccatgtaattaaccttcttcttgatagcaagtttcaaatccttgagc |
298 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28357697 |
caatgaatgagaaactgaccaagaaatatggcggtgacccatactagattgttccatgtaattaaccttcttcttgatagcaagtttcaaatccttgagc |
28357796 |
T |
|
| Q |
299 |
gttgccgtattcattagaatcacatcaaacgaggttgtatccaatttcaaaactgtaattcgcattgcactacccaattcgagtccaatgagagtttcca |
398 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28357797 |
gttgccgtattcattagaatcacatcaaacgaggttgtatccaatttcaaaactgtaattcgcattgcactacccaattcgagtccaatgagagtttcca |
28357896 |
T |
|
| Q |
399 |
catcttccagggttggattcttcggtacatctgcgagtattggatcctccaataatgctttcaacaccttcaccttcttcaaactgctcttgtattccgc |
498 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
28357897 |
catcttccagggttggattcttcggtacatctgcgagtattggatcctccaataatgctttcaacaccttcgccttcttcaaaccgctcttgtattccgc |
28357996 |
T |
|
| Q |
499 |
accttctcccatctcatcgcaaaataaccaaattcaaacgcaaaaattattttgatatgagctacttaatttttaatatcaat |
581 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
28357997 |
accttctcccatctcatcgcaaaataaccaaattcaaacgc--aaattattttgatatgagctccttaatttttaatatcaat |
28358077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 792 - 1124
Target Start/End: Original strand, 44764791 - 44765123
Alignment:
| Q |
792 |
ccataatccatgttagctagtcactataatgccatgtcataaaaaattgaaaactcttgcacaaaaatgaacgaggactatgtcatcagaaacaacaatc |
891 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44764791 |
ccataatccatgttggctagtcactataatgccatgtcataaaaaattgaaaactcttgcacaaaaatgaacgaggactatgtcatcagaaacaacaatc |
44764890 |
T |
|
| Q |
892 |
aacatgaatatgatttacttactactttattacttatacagattgatatacttgttaaatttatcatcatttcacctaattgttaaacagttgactcatt |
991 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44764891 |
aacatgaatatgatttacttactactttattacttatacagattgatatacttgtcgaatttatcatcatttcacctaattgttaaacagttgacccatt |
44764990 |
T |
|
| Q |
992 |
tctcgcaatgatctagattccaacttcctttgacaacatcaaaatatgcttggtcgtgtaaacttcaaaagttaatgatgtacattatagtttcactttt |
1091 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44764991 |
tctcgcaatgatctagattccaacttcctttgacaacatcaaaatatgcttggtcgtgtaaacttcaaaagttaatgatgtacattatagcttcactttt |
44765090 |
T |
|
| Q |
1092 |
acatgtgcaaaaaatatcttaatactttcattt |
1124 |
Q |
| |
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||||||| ||||||||||||| ||||||||||| |
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| T |
44765091 |
acatgtgtaaaaaatatcttagtactttcattt |
44765123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 795 - 1124
Target Start/End: Original strand, 28359952 - 28360280
Alignment:
| Q |
795 |
taatccatgttagctagtcactataatgccatgtcataaaaaattgaaaactcttgcacaaaaatgaacgaggactatgtcatcagaaacaacaatcaac |
894 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| || |
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|
| T |
28359952 |
taatccatgttggctagtgactataattccatgtcataaaaaattgaaaactc---cacataaatgaacgaggactatgtgatcagaaacaacaat-aat |
28360047 |
T |
|
| Q |
895 |
atgaatat--gatttacttactactttattacttatacagattgatatacttgttaaatttatcatcatttcacctaattgttaaacagttgactcattt |
992 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| | |||| ||||| |
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| T |
28360048 |
atgaatatatgatttacttactactttattacttatatagattgatatatttgtcgaatttatcatcatttcacctaattgttaaataattgaaccattt |
28360147 |
T |
|
| Q |
993 |
ctcgcaatgatctagattccaacttcctttgacaacatcaaaatatgcttggtcgtgtaaacttcaaaagttaatgatgtacattat-agtttcactttt |
1091 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||| |
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|
| T |
28360148 |
ctcgcaatgatctagattccaacttcctttgacgacatcaaaatatgcatggtcgtgtaaacttcaaaagttaatgatctacattataaccttcactttt |
28360247 |
T |
|
| Q |
1092 |
acatgtgcaaaaaatatcttaatactttcattt |
1124 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||| |
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|
| T |
28360248 |
acatgtgtaaaaaaaatcttagtactttcattt |
28360280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 28357381 - 28357471
Alignment:
| Q |
10 |
acatcatcatcgttaaggagcttgttgttatcgaatgacaaacaataattagcccaaacacttctcctgcaaataaaatgagacgaattta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
28357381 |
acatcatcatcgttaaggagcttgttgttatcgaatgacaaacaataattagcccaaacacttctcctgcaaataaaatgagatgaattta |
28357471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 619 - 716
Target Start/End: Original strand, 28359779 - 28359876
Alignment:
| Q |
619 |
aatagaactcattttctaaacaattcgtttggggtggattttattaactatttgaactcaatttcttagttaatatcaacatgagatttcttactagg |
716 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |
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|
| T |
28359779 |
aatataactcattttctaaacaattcgtttagggtggattttattaactatttgaactcaatttcttaattaatatcaacatgagtttttttactagg |
28359876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 28357588 - 28357659
Alignment:
| Q |
102 |
aaaataactttacactgtcggtgtgtaataattaaattgaaatcatattacaccagtttttgcataaaataag |
174 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28357588 |
aaaataacttta-actgttggtgtgtaataattaaattcaaatcatattacaccagtttttgcataaaataag |
28357659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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