View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5774_high_2 (Length: 857)
Name: NF5774_high_2
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 7 - 634
Target Start/End: Complemental strand, 4412235 - 4411604
Alignment:
| Q |
7 |
gtcgaagaatatactaaataaccaaacacaaatgaattttagaactttttaaatttgaacagatctatttcaaaataaaccaaactgataaattgtgatc |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
4412235 |
gtcgaaaaatatactaaataaccaaacacaaatgaattttagaactttttaaatttgaaccgatctattttaaaataaaccaaactgataaattatgatc |
4412136 |
T |
|
| Q |
107 |
tgaactgaaccaaatcgagcaatttcagtttagttcgatttggcttgattgaacactacggttgaannnnnnnnnnnnnnnacccacccaacttaaaaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4412135 |
tgaactgaaccaaatcgagcaatttcagtttagttcgatttggcttgattgaacactacggttgaattttttggtttttttacccacccaacttaaaaa- |
4412037 |
T |
|
| Q |
207 |
tatgctcattcccctcaacttatttaaaagtcttccaannnnnnnnn----ggagtacaagagagctttagcccaaaagaaagaaaacttaatgcttaat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4412036 |
tatgctcattcccctcaacttatttaaaagtcttccaatttttttttttttggattacaagagagctttagcccaaaagaaagaaaacttaatgcttaat |
4411937 |
T |
|
| Q |
303 |
taaacgaggtgttgcaataccaa-cataatcaactaaaaaacatgatctcatcagaacatgatattgttcataaataatcaaaaaagagccaccctcaca |
401 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4411936 |
taaacgaggtgttgcaataccaaacataatcaactaaaaaacatgatctcatcagaacatgatattgttcataaataatcaaaaaagagccaccctcaga |
4411837 |
T |
|
| Q |
402 |
ggccaaattagctatagcatcggcacaagaattagtctcaatgagaaaactctggacaaagagtagattaaaacgtttgtctcacatgtcctagtcttga |
501 |
Q |
| |
|
| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4411836 |
gaccaaattagctagagcatcgacacaagaattagtctcaatgagaaacctctggacaaagagtagattaaaacgtttgtctcacatgtcctagtcttga |
4411737 |
T |
|
| Q |
502 |
atttggctaaagaagtattatctgtttgtactcaatttgagattgagattccacacgtcttgattaaatttagagagaaatacttcacatcagatgatga |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4411736 |
atttggctaaagaagtattatctgtttgtactcaatttgagattgagattccacacgtcttgattaaatttagagagaaatacttcacatcagatgatga |
4411637 |
T |
|
| Q |
602 |
agccaagacttgtccaattcccagttttgtttg |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4411636 |
agccaagacttgtccaattcccagttttgtttg |
4411604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 703 - 847
Target Start/End: Complemental strand, 4411535 - 4411393
Alignment:
| Q |
703 |
acacgacatataattcaaaaaatgtttttatttgatttcaaatctttaaacgtttaattgcannnnnnngtctttattatatagtaaatttgatttgatc |
802 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||||||| |
|
|
| T |
4411535 |
acacgacatataattcaaaaaatgtttttatttgatttccaatctttaaacgtttaattgcattttttggtctttattata--gtaaatgtgatttgatc |
4411438 |
T |
|
| Q |
803 |
tcccaaattttgtaatgttgtagatactctagtttatcacacttc |
847 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4411437 |
tcccaaattttgtaatgttgtagataatctagtttatcacacttc |
4411393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 5e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 255 - 436
Target Start/End: Original strand, 4085429 - 4085611
Alignment:
| Q |
255 |
gagtacaagagagctttagcccaaaagaaagaaaacttaatgcttaattaaacgaggtgttgcaataccaacataatcaac-taaaaaacatgatctcat |
353 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| | ||||||||| ||||||| |
|
|
| T |
4085429 |
gagtacaagagggccttagcccaaaagaaagaaaacttaacgcctaattaaacgaggtgttgcaacaccaacataatcagcaaaaaaaacataatctcat |
4085528 |
T |
|
| Q |
354 |
cagaacatgatattgttcataaataatcaaaaaagagccaccctcacaggccaaattagctatagcatcggcacaagaattag |
436 |
Q |
| |
|
| ||||| || |||||||||||||||||||| ||||| |||| ||| | ||||| ||||||| |||||| |||| |||||||| |
|
|
| T |
4085529 |
ctgaacaggacattgttcataaataatcaaagaagagtcaccatcatacgccaagttagctagagcatctgcacgagaattag |
4085611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 270 - 434
Target Start/End: Original strand, 3575059 - 3575223
Alignment:
| Q |
270 |
ttagcccaaaagaaagaaaacttaatgcttaattaaacgaggtgttgcaataccaacataatcaactaaaaaacatgatctcatcagaacatgatattgt |
369 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||| || ||| | |
|
|
| T |
3575059 |
ttagcctaaaagaaagaaaacttagcgtctaattaaacgaggtgttgcaacaccaacataatcagttaaaaaatatgatctcatttgaacaagacattat |
3575158 |
T |
|
| Q |
370 |
tcataaataatcaaaaaagagccaccctcacaggccaaattagctatagcatcggcacaagaatt |
434 |
Q |
| |
|
||||||| |||| || |||||||||| ||||| | ||||||||||| | ||| ||||||||||| |
|
|
| T |
3575159 |
tcataaacaatcgaagaagagccaccatcacacgtcaaattagctagaacatatgcacaagaatt |
3575223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 297 - 434
Target Start/End: Original strand, 50657286 - 50657423
Alignment:
| Q |
297 |
cttaattaaacgaggtgttgcaataccaacataatcaactaaaaaacatgatctcatcagaacatgatattgttcataaataatcaaaaaagagccaccc |
396 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||| | |||||||||||||||||||| ||| | || ||||||||||| |||||||| |||||||||| |
|
|
| T |
50657286 |
cttaattaagcgaggtgttgcaacactaacataattagctaaaaaacatgatctcatctgaataggacattgttcataattaatcaaagaagagccaccg |
50657385 |
T |
|
| Q |
397 |
tcacaggccaaattagctatagcatcggcacaagaatt |
434 |
Q |
| |
|
||||| |||| ||||| | |||| ||||||||||| |
|
|
| T |
50657386 |
tcacacaccaagttagccagtacatctgcacaagaatt |
50657423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 256 - 350
Target Start/End: Original strand, 30022419 - 30022513
Alignment:
| Q |
256 |
agtacaagagagctttagcccaaaagaaagaaaacttaatgcttaattaaacgaggtgttgcaataccaacataatcaactaaaaaacatgatct |
350 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
30022419 |
agtacaagagatctttagcccaaaagaaaggaaacttaacacttaattaaactaggtgttgcaacaccaacattatcaactaaaagacatgatct |
30022513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University