View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5774_high_5 (Length: 464)
Name: NF5774_high_5
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 113 - 319
Target Start/End: Original strand, 33454684 - 33454890
Alignment:
| Q |
113 |
gtgcaaggttattatggtaattgtagaatatgaatattttgttattggcttgcaatgtattactaccacatatgttaatttagtgtgatagtgaagaata |
212 |
Q |
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| T |
33454684 |
gtgcaaggttattatggtaattgtagaatatgaatattttgttattggcttgcaatgtattactaccacatatgttaatttagtgtgatagtgaagaata |
33454783 |
T |
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| Q |
213 |
ggaagaaatgaaaatataaaaaggcattattggtgggagaaaaatactaaaggaggtggtgaagatcaaagaagagggagaagaacaacgaccgcttctc |
312 |
Q |
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| T |
33454784 |
ggaagaaatgaaaatataaaaaggcattattggtgggagaaaaatattaaaggaggtggtgaagatcaaagaagagggagaagaacaacgaccgcttctc |
33454883 |
T |
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| Q |
313 |
tttcctt |
319 |
Q |
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||||||| |
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| T |
33454884 |
tttcctt |
33454890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 340 - 447
Target Start/End: Original strand, 33454925 - 33455032
Alignment:
| Q |
340 |
actgtgtttatttgagagagatatatgagtcccctccaaatccaccatttttaatttttataattgtatgctttctttttccataagttgtgttgcatag |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33454925 |
actgtgtttatttgagagagatatatgagtcccctccaaatccaccatttttaatttttataattgtatgctttctttttccataagttgtgttgcatag |
33455024 |
T |
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| Q |
440 |
acaatagt |
447 |
Q |
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| T |
33455025 |
acaatagt |
33455032 |
T |
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