View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5774_high_6 (Length: 439)
Name: NF5774_high_6
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 38915692 - 38915281
Alignment:
| Q |
18 |
aaggttcagcaactatatcattgctcaatgacctggaacgtctggaagttttagtgcctgtatttggactcgagcctttgaaagaactactactttcttc |
117 |
Q |
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| T |
38915692 |
aaggttcagcaactatatcattgctcaatgacctggaatgtctggaagttttagtgcctgtatttggactcgagcctttgaaagaactactactttcttc |
38915593 |
T |
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| Q |
118 |
aacattaattgcacatttagatccatactccgggagaacctgccatcccaaaacccaaatcatccacaggcggatagcaccggagaaaaactcatagatc |
217 |
Q |
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| T |
38915592 |
aacattaattgcacatttagatccatactccgggagaacctgccatcccaaaacccaaatcatccacaggcggatagcaccggagaaaaactcatagatc |
38915493 |
T |
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| Q |
218 |
caaagagatgaagattttttacctgaattttactaggactgattttacttttaactgcatggagtcaaattttagtcagcacttaacaatgttatatggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38915492 |
caaagagatgaagattttttacctgaattttactaggactgattttacttttaactgcatggagtcaaattttagtcagcacttaacaatgttatatggg |
38915393 |
T |
|
| Q |
318 |
agtcttttggtcagagcatagcaactaacaagaaaaacgtacttgtatcataattaggcaagtcttctaacgggtagtcacgatcctttctgcttgagca |
417 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38915392 |
agtcttttggtcagagcatagcaactaataagaaaaacgtacttgtatcataattaggcaagtcttctaacgggtagtcacgatcctttctgcttgagca |
38915293 |
T |
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| Q |
418 |
ttccacttcatc |
429 |
Q |
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| T |
38915292 |
ttccacttcatc |
38915281 |
T |
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