View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5774_high_8 (Length: 428)
Name: NF5774_high_8
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_high_8 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 88 - 411
Target Start/End: Original strand, 4867184 - 4867524
Alignment:
| Q |
88 |
ttatcacaataaactaaactagccttgtgaatggggaaatgtaattccaaaagcaagtttcgtaagcaacaagattcaaaaaccacattggcaaccgctt |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| |||||| |||| || |
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| T |
4867184 |
ttatcacaataaactaaactagccttgtgaatggggaaatgtaattccaaaagcaagtttcataaccaacaagattcagaaaccgcattgg-aacccctc |
4867282 |
T |
|
| Q |
188 |
gatattctgcttcagcacttgaacaagataaagtaggttatcgtttggaagacca-------------------agagatacacagtaatcagaggtgga |
268 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| || |||||||||| |
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| T |
4867283 |
gatattctgcttcagcacttgaacgagataaagtaggttgtcgtttggaagaccatgagagtaagttgtcaccaagagatacacagcaaccagaggtgga |
4867382 |
T |
|
| Q |
269 |
tcgtcaggtatctgggcaacttccccaatctgcatttgtgtaagcaatcaatgatgatgtagaagaagagtaaagttgcaatccatactcgcgtgtgccc |
368 |
Q |
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|
||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4867383 |
tcgtcaggtatctaggcaacttccccaatctgcatt-gtgtaaacaatcaatgatgatgtagaagaagagtaaagttgcagtccatactcgcgtgtgccc |
4867481 |
T |
|
| Q |
369 |
tgaatatatttcaggatgcgtcaaagggtgtgcatgtgatcat |
411 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4867482 |
tgaatatatctcaggatgcgtcaaagggtgtgcatgtgatcat |
4867524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 4865049 - 4865121
Alignment:
| Q |
16 |
atgaatgtccatttcgatatgttttgtgcgttggtgctggacgggatttcggatagatatatggcactaacat |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4865049 |
atgaatgtccatttcgatatgttttgtgcgttggtgctggacgggatttcggatagatatatggcactaacat |
4865121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 19116533 - 19116739
Alignment:
| Q |
16 |
atgaatgtccatttcgatatgttttgtgcgttggtgctggacgggatttc-ggatagatatatggcactaacattatcacaataaactaaactagccttg |
114 |
Q |
| |
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||||||||||||| ||||||||||||||| | |||||||||||| |||| |||||||||||||||||||| ||||||| ||||||| || |||| ||| |
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| T |
19116533 |
atgaatgtccatta-gatatgttttgtgcgctagtgctggacgggttttccggatagatatatggcactaaaattatcataataaaccaaggtagcattg |
19116631 |
T |
|
| Q |
115 |
tgaatggggaaatgtaattccaaaagcaagtttcgtaagcaacaagattcaaaaaccacattggcaaccgcttgatattctgcttcagcacttgaacaag |
214 |
Q |
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|
|||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| || ||||| | |||||||||||||||| || |
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|
| T |
19116632 |
tgaatggggatatgtaattccaaaagcaggtttcgtaggcaacaagattcataaaccacattggcaactcctcgatatccggcttcagcacttgaacgag |
19116731 |
T |
|
| Q |
215 |
ataaagta |
222 |
Q |
| |
|
||||||| |
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|
| T |
19116732 |
ttaaagta |
19116739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 247 - 411
Target Start/End: Original strand, 19116785 - 19116948
Alignment:
| Q |
247 |
atacacagtaatcagaggtggatcgtcaggtatctgggcaacttccccaatctgcatttgtgtaagcaatcaatgatgatgtagaagaagagtaaagttg |
346 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| |||||||| |||||||||||||| | |||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
19116785 |
atacacagtaaccagaggtggattttctggtatatgggcaacctccccaatctgcatctctgtaagcaataaatgatgatgtagaagaagagt-aagttg |
19116883 |
T |
|
| Q |
347 |
caatccatactcgcgtgtgccctgaatatatttcaggatgcgtcaaagggtgtgcatgtgatcat |
411 |
Q |
| |
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|| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
19116884 |
caggccatacttacgtgtgccctgaataaatttcaggatgcgtcaaagggcatgcatgtgatcat |
19116948 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 247
Target Start/End: Original strand, 7324444 - 7324624
Alignment:
| Q |
67 |
gatagatatatggcactaacattatcacaataaactaaactagccttgtgaatggggaaatgtaattccaaaagcaagtttcgtaagcaacaagattcaa |
166 |
Q |
| |
|
|||| |||||| ||||||||||| ||||| || || | ||||||||| || || ||||||| |||||||| | ||| ||||| |||||||| ||| |
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| T |
7324444 |
gataaatatatcgcactaacattgtcacagtagaccatggtagccttgtagataggacaatgtaactccaaaagtaggttgcgtaaccaacaagactcag |
7324543 |
T |
|
| Q |
167 |
aaaccacattggcaaccgcttgatattctgcttcagcacttgaacaagataaagtaggttatcgtttggaagaccaagaga |
247 |
Q |
| |
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| || ||||||||||| || | ||||| ||||||||||| || | |||||| || |||| |||||||||||||| |||| |
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| T |
7324544 |
atacgacattggcaacacctcggtattcggcttcagcactagagcgagataatgtgggttggcgtttggaagaccatgaga |
7324624 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 44387497 - 44387404
Alignment:
| Q |
17 |
tgaatgtccatttcgatatgttttgtgcgttggtgctggacgggatttcg-gatagatatatggcactaacattatcacaataaactaaactag |
109 |
Q |
| |
|
||||||||||| || |||||||| || ||||| ||||| || ||||| | || || || ||||||||||||||||||||||| || ||||||| |
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|
| T |
44387497 |
tgaatgtccatctcaatatgtttagtacgttgatgctgcactggattaccagaaaggtagatggcactaacattatcacaatacaccaaactag |
44387404 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 32016 - 31933
Alignment:
| Q |
16 |
atgaatgtccatttcgatatgttttgtgcgttggtgctggacgggatttcg-gatagatatatggcactaacattatcacaata |
98 |
Q |
| |
|
|||||||||||| || |||||||||||||| || ||||| || ||||| | |||||||| |||||||||||||| |||||||| |
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|
| T |
32016 |
atgaatgtccatctcaatatgttttgtgcgctgatgctgcacaggattaccagatagatagatggcactaacattgtcacaata |
31933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 45181907 - 45181820
Alignment:
| Q |
17 |
tgaatgtccatttcgatatgttttgtgcgttggtgctggacgggatttcg-gatagatatatggcactaacattatcacaataaacta |
103 |
Q |
| |
|
|||||||||||||| || ||||| || ||||| ||||| |||||||| | ||||||||||| ||||| || |||||||||||||||| |
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|
| T |
45181907 |
tgaatgtccatttcaatgtgtttggtccgttgatgctgaacgggattaccagatagatatattgcactgacgttatcacaataaacta |
45181820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 1853792 - 1853694
Alignment:
| Q |
16 |
atgaatgtccatttcgatatgttttgtgcgttggtgctggacgggatttcg-gatagatatatggcactaacattatcacaataaactaaactagcctt |
113 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| || || || || ||||||| || ||||| || |||||||||||||||||||| || ||||||||||| |
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|
| T |
1853792 |
atgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagagataaatcgcactaacattatcacaatacaccaaactagcctt |
1853694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 36650241 - 36650143
Alignment:
| Q |
16 |
atgaatgtccatttcgatatgttttgtgcgttggtgctggacgggatttcg-gatagatatatggcactaacattatcacaataaactaaactagcctt |
113 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| || || || || ||||||| || ||||| || |||||||||||||||||||| || ||||||||||| |
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|
| T |
36650241 |
atgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagagataaatcgcactaacattatcacaatacaccaaactagcctt |
36650143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 22325 - 22227
Alignment:
| Q |
16 |
atgaatgtccatttcgatatgttttgtgcgttggtgctggacgggatttcg-gatagatatatggcactaacattatcacaataaactaaactagcctt |
113 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| || || || || ||||||| || ||||| || |||||||||||||||||||| || ||||||||||| |
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|
| T |
22325 |
atgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagagataaatcgcactaacattatcacaatacaccaaactagcctt |
22227 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 7084903 - 7084805
Alignment:
| Q |
16 |
atgaatgtccatttcgatatgttttgtgcgttggtgctggacgggatttcg-gatagatatatggcactaacattatcacaataaactaaactagcctt |
113 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| || || || || ||||||| || ||||| || |||||||||||||||||||| || ||||||||||| |
|
|
| T |
7084903 |
atgaatatccatctcgatatgtttagtgcgctgatgttgaaccggatttccagagagataaatcgcactaacattatcacaatacaccaaactagcctt |
7084805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 7231786 - 7231939
Alignment:
| Q |
73 |
tatatggcactaacattatcacaataaactaaactagccttgtgaatggggaaatgtaattccaaaagcaagtttcgtaagcaacaagattcaaaaacca |
172 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||| |||| || ||||| ||| |||| | |||||| || | |||||| | |||||||||||| | || | |
|
|
| T |
7231786 |
tatattgcactaatattatcacaatgcactaaggtagctttctgaattgggcaatggagttccaagagaaggtttcggatccaacaagattcagagacaa |
7231885 |
T |
|
| Q |
173 |
cattggcaaccgcttgatattctgcttcagcacttgaacaagataaagtaggtt |
226 |
Q |
| |
|
|||| |||||| || |||||| |||||||||||||| | ||||| ||| |||| |
|
|
| T |
7231886 |
catttgcaacccctctatattcggcttcagcacttgatcgagatagagttggtt |
7231939 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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