View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5774_low_10 (Length: 400)
Name: NF5774_low_10
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 36223446 - 36223826
Alignment:
| Q |
17 |
gttagataaataaattgccaccttctcattcctttcaagttgcttcatctcatcctgaaaataaaaaggttccatttaggccattttaacaaaccaaatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36223446 |
gttagataaataaattgccaccttctcattcctttcaagttgcttcatctcatcctgaaaataaaaaggttccatttaggccattttaacaaaccaattg |
36223545 |
T |
|
| Q |
117 |
ttcataagaagaagaa-aaaataatgaatgaactcataaatttttataacctctgttaaatttccaggtaatgtgcccaaatcaatatatgagtccactt |
215 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36223546 |
ttcataagaagaaaaataaaataatgaatgaactcataaatttttataacctctgttaaatttccaggtaatgtgcccaaatcaatatatgagtccactt |
36223645 |
T |
|
| Q |
216 |
cttggtaccctttaagaagaatttcctgcctcttataatatttagcaagtttcctttgtctctctgaaggattgaaatgcaaaattcattttagaaacat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
36223646 |
cttggtaccctttaagaagaatttcctgcctcttataatatttagcaagtttcctttgtctctctgaaagattgaaatacaaaattcattttagaaacat |
36223745 |
T |
|
| Q |
316 |
caaatacaaaatgcttacatatatgaaaatgttaacaaaaagggttgttgatttaagtactgattgttcttaagaataatc |
396 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36223746 |
caaatacaaaatgcatacatatatgaaaatgttaacaaaaagggttgttcatttaagtactgattgttcttaagaataatc |
36223826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University