View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5774_low_12 (Length: 388)
Name: NF5774_low_12
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 5621176 - 5621544
Alignment:
| Q |
19 |
gacattacactggccattgataaccagataccacatgtagaactatattattggttttactttcctctttattaaaatggtgtaaaga-tgatccaaatt |
117 |
Q |
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| T |
5621176 |
gacattatactggccattgataaccagataccacatgtagaactatattattggttttacttacctctttattaaaatggtgtaaagaatgatccaaatt |
5621275 |
T |
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| Q |
118 |
catctccatcaactttatatttcaaaatttagcgaacttaagtcacttgtaccagctgatcaatggaggtgttgtttatataaatctggtgttttaagct |
217 |
Q |
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| T |
5621276 |
catctccatcaactttatatttcaaaatttagcgaacttaagtcacttgtaccagctgatcaatggaggtgttgtttatataaatctggtgttttaagct |
5621375 |
T |
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| Q |
218 |
ggttcagttttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtat |
317 |
Q |
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| T |
5621376 |
ggttcagtt--catacataaatttatatcttttaacagggatgagggagtccactggggaatacagaatggcctttatctttctagaagcacagtggtat |
5621473 |
T |
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| Q |
318 |
attttaagcacaataacatggattctttaagagaaactttagagaacattacttccaaatataagaggacc |
388 |
Q |
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| T |
5621474 |
attttaagcacaataacatggattctttaagagaaactttagagaacattacttccatatataagaggacc |
5621544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 226 - 382
Target Start/End: Complemental strand, 30635428 - 30635272
Alignment:
| Q |
226 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaag |
325 |
Q |
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| T |
30635428 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaag |
30635329 |
T |
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| Q |
326 |
cacaataacatggattctttaagagaaactttagagaacattacttccaaatataag |
382 |
Q |
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| T |
30635328 |
cacaatgacatggattctttagaagaaactttagagaagcttacttctaagtataag |
30635272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 226 - 382
Target Start/End: Complemental strand, 21424229 - 21424073
Alignment:
| Q |
226 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaag |
325 |
Q |
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||||||| |||| ||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||| |
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| T |
21424229 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaag |
21424130 |
T |
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| Q |
326 |
cacaataacatggattctttaagagaaactttagagaacattacttccaaatataag |
382 |
Q |
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|||||| |||||||||||||| |||||| |||||||| ||| ||| ||||||||| |
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| T |
21424129 |
cacaatgacatggattctttagaagaaacattagagaagcttagttctaaatataag |
21424073 |
T |
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