View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5774_low_15 (Length: 257)
Name: NF5774_low_15
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 3647441 - 3647687
Alignment:
| Q |
1 |
tgacttgtctgtacttcaacaaatgcaggcaagaaataagtttcatatttattccaaattgtttcaaatgtgaaatctagctttaaatgtttatgatgaa |
100 |
Q |
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| T |
3647441 |
tgacttgtctgtacttcaacaaatgcaggcaagaaataagtttcatatttattccaaattgtttcaaatgtgaaatctagctttaaatgtttatgatgaa |
3647540 |
T |
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| Q |
101 |
ccaatgttcctttttcttcataatcatcttggcctgattatttttatttcaattttcttgaatagaaccttgttcctgaatcggatcgtttgattgttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3647541 |
ccaatgttcctttttcttcataatcatcttggcctgattatttttatttcaattttcttgaatagaaccttgttcctgaatcggatcgtttgattgttgg |
3647640 |
T |
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| Q |
201 |
aggtgttcagagttcacttcagtcctttatggatttattggcctatg |
247 |
Q |
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| T |
3647641 |
aggtgttcagagttcacttcagtcctttatggatttattggcctatg |
3647687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 3638422 - 3638666
Alignment:
| Q |
1 |
tgacttgtctgtacttcaacaaatgcaggcaagaaataa-gtttcatatttattccaaattgtttcaaatgtgaaatctagctttaaatgtttatgatga |
99 |
Q |
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|||||| |||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||| |||||| |||||| ||||||| |||||||||| |
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| T |
3638422 |
tgacttatctgtacttcaacaaatgcaggcaagaaataatggctcatattt-ttccatattgtttcgtatgtgatatctagatttaaatttttatgatga |
3638520 |
T |
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| Q |
100 |
accaatgttcctttttcttcataatcatcttggcctgattatttttatttcaattttcttgaatagaaccttgttcctgaatcggatcgtttgattgttg |
199 |
Q |
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||||| |||||||| | |||||||||||||||||||||| ||| ||||||| |||||||| | ||||||||||||| || ||||||||| ||||||||| |
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| T |
3638521 |
accaaagttcctttgt--tcataatcatcttggcctgattgtttctatttcacttttcttgtacagaaccttgttcccgagtcggatcgtatgattgttg |
3638618 |
T |
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| Q |
200 |
gaggtgttcagagttcacttcagtcctttatggatttattggcctatg |
247 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
3638619 |
gaggtgttcagaattcacttcagtcctttatggatctattggcctatg |
3638666 |
T |
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