View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5774_low_18 (Length: 237)

Name: NF5774_low_18
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5774_low_18
NF5774_low_18
[»] chr1 (5 HSPs)
chr1 (1-222)||(30941363-30941582)
chr1 (112-160)||(27209843-27209892)
chr1 (125-155)||(47655494-47655524)
chr1 (40-88)||(26829530-26829578)
chr1 (40-88)||(32187091-32187139)
[»] chr4 (4 HSPs)
chr4 (40-88)||(27284110-27284158)
chr4 (41-87)||(39810731-39810777)
chr4 (40-88)||(2824843-2824891)
chr4 (41-85)||(31861458-31861502)
[»] chr8 (4 HSPs)
chr8 (40-87)||(1342360-1342406)
chr8 (41-88)||(11150961-11151008)
chr8 (40-87)||(31331039-31331086)
chr8 (40-85)||(27506976-27507021)
[»] chr5 (2 HSPs)
chr5 (41-88)||(2089143-2089190)
chr5 (40-88)||(30840625-30840673)
[»] chr3 (1 HSPs)
chr3 (41-88)||(50958899-50958946)
[»] chr2 (3 HSPs)
chr2 (1-88)||(23453344-23453431)
chr2 (40-88)||(4978779-4978827)
chr2 (40-88)||(4996687-4996735)
[»] chr7 (1 HSPs)
chr7 (40-81)||(34993162-34993203)
[»] chr6 (1 HSPs)
chr6 (1-88)||(5611156-5611242)


Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30941582 - 30941363
Alignment:
Q  1 tggttaagcatccagaacaagtaagtttatatnnnnnnngttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagacnnnnnnntgtat 100  Q
    ||||||||||||||||||||||||||||| ||       ||||||||||||||||||||| |||| ||||||||||||||||||||||       |||||    
T  30941582 tggttaagcatccagaacaagtaagtttacatgaaaaa-gttgtgtaattattgtttgataaaaaataacatgttatatttccaagacaaaaaa-tgtat 30941485  T
Q  101 ttgaagattctttaaccatcgccctagggcaatggttagcaagaccctaatttaattaatttacaataatcaaatttgatccaatatgtatcactgaacc 200  Q
    |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  30941484 ttgaagattccttaaccatcgccctagggcactggttagcgagaccctaatttaattaatttacaaaaatcaaatttgatccaatatgtatcacttaacc 30941385  T
Q  201 tgaatagttagagagtgctgac 222  Q
    ||||||||||||||||||||||    
T  30941384 tgaatagttagagagtgctgac 30941363  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 27209843 - 27209892
Alignment:
Q  112 ttaaccatcgccct-agggcaatggttagcaagaccctaatttaattaat 160  Q
    |||||||| ||||| |||||||||||||||||||||||||||| ||||||    
T  27209843 ttaaccattgccctcagggcaatggttagcaagaccctaattttattaat 27209892  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 47655494 - 47655524
Alignment:
Q  125 tagggcaatggttagcaagaccctaatttaa 155  Q
    |||||||||||||||||||||||||||||||    
T  47655494 tagggcaatggttagcaagaccctaatttaa 47655524  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 26829530 - 26829578
Alignment:
Q  40 gttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    |||||||||| |||  || |||||||||||||| |||||||||||||||    
T  26829530 gttgtgtaatcattactttatcaaaagtaacatcttatatttccaagac 26829578  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 32187091 - 32187139
Alignment:
Q  40 gttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    |||||| ||||||| | |||||||||||||||| |||||||| ||||||    
T  32187091 gttgtgcaattattatctgatcaaaagtaacatcttatattttcaagac 32187139  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 27284110 - 27284158
Alignment:
Q  40 gttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    |||||| ||| ||| |||||||||||||||||| |||||||||||||||    
T  27284110 gttgtgcaatcattatttgatcaaaagtaacatcttatatttccaagac 27284158  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 39810777 - 39810731
Alignment:
Q  41 ttgtgtaattattgtttgatcaaaagtaacatgttatatttccaaga 87  Q
    |||||||||||||  ||||||||||||||||| |||||||| |||||    
T  39810777 ttgtgtaattattacttgatcaaaagtaacatcttatattttcaaga 39810731  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 2824891 - 2824843
Alignment:
Q  40 gttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    |||||||||| |||  ||||||||||||||||| ||||||| |||||||    
T  2824891 gttgtgtaatcattacttgatcaaaagtaacatcttatattcccaagac 2824843  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 31861502 - 31861458
Alignment:
Q  41 ttgtgtaattattgtttgatcaaaagtaacatgttatatttccaa 85  Q
    ||||||||| |||  ||||||||||||||||| ||||||||||||    
T  31861502 ttgtgtaatcattacttgatcaaaagtaacatcttatatttccaa 31861458  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 1342360 - 1342406
Alignment:
Q  40 gttgtgtaattattgtttgatcaaaagtaacatgttatatttccaaga 87  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  1342360 gttgtgtaatcattgttt-atcaaaagtaacatcttatatttccaaga 1342406  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 11150961 - 11151008
Alignment:
Q  41 ttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    ||||||||| ||| |||||||||||||||||| ||||||||| |||||    
T  11150961 ttgtgtaatcattatttgatcaaaagtaacatcttatatttctaagac 11151008  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 31331039 - 31331086
Alignment:
Q  40 gttgtgtaattattgtttgatcaaaagtaacatgttatatttccaaga 87  Q
    |||||||||| | |||||||||||||||||||| ||||||||| ||||    
T  31331039 gttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaaga 31331086  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 27507021 - 27506976
Alignment:
Q  40 gttgtgtaattattgtttgatcaaaagtaacatgttatatttccaa 85  Q
    |||||||||||||| ||| ||||||||||| || ||||||||||||    
T  27507021 gttgtgtaattattattttatcaaaagtaatatcttatatttccaa 27506976  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 2089190 - 2089143
Alignment:
Q  41 ttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    ||||||||| ||| ||||||||||||||| || |||||||||||||||    
T  2089190 ttgtgtaataattatttgatcaaaagtaaaatcttatatttccaagac 2089143  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 30840673 - 30840625
Alignment:
Q  40 gttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    |||||||||| |||  ||||||||||||||||| |||||||| ||||||    
T  30840673 gttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagac 30840625  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 50958899 - 50958946
Alignment:
Q  41 ttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    ||||||||| |||  |||||||||| ||||||||||||||||||||||    
T  50958899 ttgtgtaatcatttcttgatcaaaaataacatgttatatttccaagac 50958946  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23453344 - 23453431
Alignment:
Q  1 tggttaagcatccagaacaagtaagtttatatnnnnnnngttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    |||||||| ||||| |||||| |||||| |||       ||||||||||  || |||||||||||||||||| |||||||| ||||||    
T  23453344 tggttaagtatccaaaacaagcaagtttttatggaaaaagttgtgtaatctttatttgatcaaaagtaacatcttatattttcaagac 23453431  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 4978827 - 4978779
Alignment:
Q  40 gttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    |||||||||| |||  ||||||||||||||||| |||||||| ||||||    
T  4978827 gttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagac 4978779  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 4996735 - 4996687
Alignment:
Q  40 gttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    |||||||||| |||  ||||||||||||||||| |||||||| ||||||    
T  4996735 gttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagac 4996687  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 34993203 - 34993162
Alignment:
Q  40 gttgtgtaattattgtttgatcaaaagtaacatgttatattt 81  Q
    |||||||||||||| ||| |||||||||||||| ||||||||    
T  34993203 gttgtgtaattattattttatcaaaagtaacatcttatattt 34993162  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 5611242 - 5611156
Alignment:
Q  1 tggttaagcatccagaacaagtaagtttatatnnnnnnngttgtgtaattattgtttgatcaaaagtaacatgttatatttccaagac 88  Q
    ||||||| |||||| ||||||||||||| |||       ||||| |||||||| |||||| ||||||||||| ||||||||| |||||    
T  5611242 tggttaaacatccaaaacaagtaagtttttatgaataa-gttgtataattattatttgattaaaagtaacatcttatatttctaagac 5611156  T

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