View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5774_low_19 (Length: 204)
Name: NF5774_low_19
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 41375833 - 41376005
Alignment:
| Q |
15 |
atcatgaaaacatattggatttttaagctttttgacatgaagaggtggcaaacatttgtaagagaaacggattgatttggatcttacaacttattgttga |
114 |
Q |
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| T |
41375833 |
atcatgaaaacatattggatttttaagctttttgacatgaagaggtggcaaacatttgtaagagaaacggattgatttggatcttacaacttattgttga |
41375932 |
T |
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| Q |
115 |
tatttcaaagttctaacgagnnnnnnnntaataagaagggagcggtaataacagccacaagaggagcttaatg |
187 |
Q |
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| T |
41375933 |
tatttcaaagttctaacgagaaaaaaaataataagaagggaggggtaataacagccacaagaggagcttaatg |
41376005 |
T |
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