View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5774_low_3 (Length: 802)
Name: NF5774_low_3
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_low_3 |
 | |
|
| [»] chr4 (12 HSPs) |
| |
|
| [»] scaffold0054 (2 HSPs) |
| | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 729; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 18 - 802
Target Start/End: Original strand, 20426077 - 20426861
Alignment:
| Q |
18 |
attgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttatttcatggattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20426077 |
attgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttatttcatggattt |
20426176 |
T |
|
| Q |
118 |
ggttatgaccatattcaagatgacattaagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacgggaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20426177 |
ggttatgaccatattcaagatgacattaagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacgggaag |
20426276 |
T |
|
| Q |
218 |
atgtgccatggaatgaaatatcctatgaacctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaattgctg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20426277 |
atgtgccatggaatgaaatatcctatgaacctttatgggagatttatagcgtaagatgtaactcttggagaaaacttgatttcaatatgcctaattgctg |
20426376 |
T |
|
| Q |
318 |
gagtggtagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgacttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20426377 |
gagtggtagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgacttt |
20426476 |
T |
|
| Q |
418 |
agcaatgaaatatgttgtacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagattaacaaagagacatttggtggtat |
517 |
Q |
| |
|
|||||||| || | || ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20426477 |
agcaatgagatgttttttacaacagagatacccttagacatacctttagacataggtaccaatttgagttttagattaacaaagagacatttggtggtat |
20426576 |
T |
|
| Q |
518 |
tgaatggatccattgcttcgatctcatggtatttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaact |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20426577 |
tgaatggatccattgcttcgatctcatggtatttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaact |
20426676 |
T |
|
| Q |
618 |
ctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagctagtctgtttt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
20426677 |
ctttgttgttggaccattgctctacattgagcgtcttattggagtggggatgaacggtgatattttcctaatataaaaagatggtcagctagtctgtttt |
20426776 |
T |
|
| Q |
718 |
gatttacatacccaggagactgaaaaacttgggtgttatgggaggcgttttaatattgcaatttacaagaaaagccttgtttcga |
802 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20426777 |
gatttacatacccaggagactgaaaaacttgggtgttatgggaggcgtttttatattgcaatttacaagaaaagccttgtttcga |
20426861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 18 - 649
Target Start/End: Complemental strand, 20456040 - 20455406
Alignment:
| Q |
18 |
attgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttatttcatggattt |
117 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||| | | || |||| || || ||||||||||||||| | |||| ||||||||||| |
|
|
| T |
20456040 |
attgtggaacctagctacccatgaattttaggtcattcctcccaaccttgccgagtatgtatcagcttatcgagaggctttaaatttagttcatggattt |
20455941 |
T |
|
| Q |
118 |
ggttatgaccatattcaagatgacattaagattattag---gtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacggg |
214 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||| | |||| |||||||||| |||||||||| ||||||||| ||||||||||||| ||| | |
|
|
| T |
20455940 |
gattatgaccatattcaagatgacattacaattattattatgcatgtacatttttgtcaaataaatggtcgaggtcttctacttctcaatgtgtgacacg |
20455841 |
T |
|
| Q |
215 |
aagatgtgccatggaatgaaatatcctatgaacctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaattg |
314 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| || |||||||||||||||||| || |
|
|
| T |
20455840 |
aagatgtgccatggaataaaatatcctatgaaactttatgagagatttatagtgtaagatgtaactcttggaggacacatgatttcaatatgcctaaatg |
20455741 |
T |
|
| Q |
315 |
ctggagtggtagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgac |
414 |
Q |
| |
|
|||| | |||||||||||| ||||||||| || |||||||||||||||||||| |||| |||||||||| || || ||||||||||||||| ||| || |
|
|
| T |
20455740 |
ttggaccgatagttcaaatgatcgattgtacatggatggaatatgtcattggtggtatgtaactgaagatcggggtgaacattttttggtgtcgttttac |
20455641 |
T |
|
| Q |
415 |
tttagcaatga-aatatgttgtacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagattaacaaagagacatttggtg |
513 |
Q |
| |
|
| | ||||||| | | | || ||||||| | ||||||||||||||| |||| |||||| || ||||||| | |||||| | |||||| |||||| |
|
|
| T |
20455640 |
tat-gcaatgagagttttttttacaacacatatacccttagacataacttcggacatatatcccaattttctttctagatttgtgacgagacacttggtg |
20455542 |
T |
|
| Q |
514 |
gtattgaatggatccattgcttcgatctcatggtatttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggacca |
613 |
Q |
| |
|
|| || ||||| || |||| ||||||||||||| || || | ||||| |||||||||| |||| ||||||||||||| | ||||| | ||| | |
|
|
| T |
20455541 |
gtgtttaatggttcaattggttcgatctcatggcatatatcagagattacttatcacatatcatttttggatgaactcggcgtgcaagaatcatagacaa |
20455442 |
T |
|
| Q |
614 |
aactctttgttgttggaccattgctctacattgagc |
649 |
Q |
| |
|
||||||| ||||||||| |||| | |||||||||| |
|
|
| T |
20455441 |
aactcttagttgttggatcatttccatacattgagc |
20455406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 395 - 680
Target Start/End: Original strand, 20452920 - 20453207
Alignment:
| Q |
395 |
attttttggtgtcatttgactttagcaatgaaatatgttgtacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagatt |
494 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| | | || |||||| | |||||||||| |||||||||| | | ||| ||||||| | |||| || |
|
|
| T |
20452920 |
attttttggtgtcatttaacttaagcaatgaagtgtttttaacaaca-acatacccttagtcataccttcaaat-tggatcccaattttctttttagttt |
20453017 |
T |
|
| Q |
495 |
aacaaagagacatttggtggtattgaatggatccattgcttcgatctcatggtatttag---atacaactacttttcacatatcaattttaagtgaactc |
591 |
Q |
| |
|
| |||||||| |||||| | | ||| |||| |||||||||||||||||||||||| ||| || || || |||||||||||||||| |||| || |
|
|
| T |
20453018 |
tgcgaagagacacttggtgctgcttaatagatcaattgcttcgatctcatggtatttaataaataaaattatttatcacatatcaattttaggtgagttc |
20453117 |
T |
|
| Q |
592 |
ggcgtgaaggaatcgtggaccaaactctttgttg-ttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatat |
680 |
Q |
| |
|
|||||||||||||| || || ||| ||||||||| ||| |||||| |||| ||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
20453118 |
ggcgtgaaggaatcatgtactaaattctttgttgtttgaaccattttcctacgttgagcgtcatattggagcgggaaagaacggtgatat |
20453207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 4877545 - 4877608
Alignment:
| Q |
247 |
cctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgccta |
310 |
Q |
| |
|
||||| ||||||||||||||| || || |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4877545 |
cctttttgggagatttatagtctaagaagtaactcttggaagaaacttgatttcaatatgccta |
4877608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 551 - 620
Target Start/End: Complemental strand, 48742063 - 48741994
Alignment:
| Q |
551 |
tagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt |
620 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| |||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
48742063 |
tagagacaactaccttttgcatatcaattttaggtgaactcggtgtgaaggaatcttggactaaactctt |
48741994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 667
Target Start/End: Original strand, 9569198 - 9569306
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg |
658 |
Q |
| |
|
|||| |||||||||||| ||||| ||||| ||| | ||||||||||||||||||||||| |||||||||| ||| | ||||||||||| ||| | |
|
|
| T |
9569198 |
actaattttcacatatcgattttgggtgaatatggcattaaggaatcgtggaccaaactcttccttgttggaccgttgtcttgcattgagcgtcctatcg |
9569297 |
T |
|
| Q |
659 |
gagtgggga |
667 |
Q |
| |
|
||||||||| |
|
|
| T |
9569298 |
gagtgggga |
9569306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 54295152 - 54295079
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc |
632 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||| |||| ||||||||||||||||| || |||||||||| |
|
|
| T |
54295152 |
actaattttcacatatcaattttgggtgaattcggtgtgatagaatcgtggaccaaacttttcattgttggacc |
54295079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 54290838 - 54290894
Alignment:
| Q |
18 |
attgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtc |
74 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||||||| |||||||| |||||| |
|
|
| T |
54290838 |
attgtggaacccagctacccacaaatttacggtcattcctcatagtccggttgagtc |
54290894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 1326938 - 1327003
Alignment:
| Q |
245 |
aacctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgccta |
310 |
Q |
| |
|
||||||| |||||||||||||||||| || || | ||||||| || ||||||||| ||||||||| |
|
|
| T |
1326938 |
aacctttttgggagatttatagtgtaagaagtcattcttggaagagacttgatttgtatatgccta |
1327003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 665
Target Start/End: Complemental strand, 9582049 - 9581948
Alignment:
| Q |
564 |
ttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtg |
663 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | ||||| || |||||||||||||| | |||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
9582049 |
ttttcacatatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtg |
9581950 |
T |
|
| Q |
664 |
gg |
665 |
Q |
| |
|
|| |
|
|
| T |
9581949 |
gg |
9581948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 665
Target Start/End: Complemental strand, 9587744 - 9587643
Alignment:
| Q |
564 |
ttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtg |
663 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | ||||| || |||||||||||||| | |||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
9587744 |
ttttcacatatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtg |
9587645 |
T |
|
| Q |
664 |
gg |
665 |
Q |
| |
|
|| |
|
|
| T |
9587644 |
gg |
9587643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 620
Target Start/End: Original strand, 37897951 - 37898012
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt |
620 |
Q |
| |
|
|||||||||||| ||||| |||| | ||||| || ||||||||||||||||||||||||| |
|
|
| T |
37897951 |
actacttttcacgtatcagttttgggcgaacttggtatgaaggaatcgtggaccaaactctt |
37898012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 3e-75; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 16 - 749
Target Start/End: Complemental strand, 15338765 - 15338029
Alignment:
| Q |
16 |
tcattgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttat-ttcatgga |
114 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||||| | ||||| ||||| | ||||||||||| |||||||| | || || |||||||| |
|
|
| T |
15338765 |
tcattgtggaacctaactacccatgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggcttc-agttgatgttcatgga |
15338667 |
T |
|
| Q |
115 |
tttggttatgaccatattcaagatgacattaagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacggg |
214 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||||| | || ||| || ||||| | |||| ||||| ||| ||||||||||| || | |
|
|
| T |
15338666 |
tttggttatgactatattaaagatgactttaagattattaggtatatacaatttactccaataagtagtgggcgtcttaaacgtctcaatgtgcaacatg |
15338567 |
T |
|
| Q |
215 |
aagatgtgccatggaatgaaatatcctatgaacctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaattg |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||| || || | || |||||||||| ||||| |||| | ||||||||||| | |
|
|
| T |
15338566 |
aagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaactcttggaagaaacatgatgttaatatgcctaagcg |
15338467 |
T |
|
| Q |
315 |
ctggagtggtagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgac |
414 |
Q |
| |
|
||| || || ||||| |||| | ||||||| | ||||| | | |||||||||| ||| | |||| || |||| |||| |||| || |||||||| |
|
|
| T |
15338466 |
ttggtgtagtggttcatatgaaccattgtacattgatggattgtctcattggtggtctgtaagtgaaaattgtgatgaacatcttttagtttcatttgat |
15338367 |
T |
|
| Q |
415 |
tttagcaatgaaatatgttgtacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagattaacaaagagacatttggtgg |
514 |
Q |
| |
|
|| ||||| || || | || ||| ||| ||||| |||||||||| | |||||||||||| ||||| | || | || | |||| ||||||| |
|
|
| T |
15338366 |
ttgagcaacgagatgttttttacgacaaccatacctatagacataccgttagacatagatacaaattttcatcttggttttgtgtatagacgattggtgg |
15338267 |
T |
|
| Q |
515 |
tattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggac |
611 |
Q |
| |
|
| | ||| ||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
15338266 |
tgcttaatagatccattgcttcgatctcatggtatttattagataaaactattttttacatatcaattttgggtgaactcggcgtgaaagaatcatggac |
15338167 |
T |
|
| Q |
612 |
caaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagctagtc |
711 |
Q |
| |
|
||||| ||||||||||||||| | | |||||||| ||||||||||||| ||| ||||| |||||||| ||| | || ||||||||||| |||||||| |
|
|
| T |
15338166 |
taaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagatggtaagctagtc |
15338067 |
T |
|
| Q |
712 |
tgttttgatttacatacccaggagactgaaaaacttgg |
749 |
Q |
| |
|
||||| |||| ||| ||| |||||||| ||||||| |
|
|
| T |
15338066 |
tgtttcagtttaagtactcagaagactgaagaacttgg |
15338029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 16 - 749
Target Start/End: Complemental strand, 15427830 - 15427094
Alignment:
| Q |
16 |
tcattgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttat-ttcatgga |
114 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||||| | ||||| ||||| | ||||||||||| |||||||| | || || |||||||| |
|
|
| T |
15427830 |
tcattgtggaacctaactacccatgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggcttc-agttgatgttcatgga |
15427732 |
T |
|
| Q |
115 |
tttggttatgaccatattcaagatgacattaagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacggg |
214 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||||| | || ||| || ||||| | |||| ||||| ||| ||||||||||| || | |
|
|
| T |
15427731 |
tttggttatgactatattaaagatgactttaagattattaggtatatacaatttactccaataagtagtgggcgtcttaaacgtctcaatgtgcaacatg |
15427632 |
T |
|
| Q |
215 |
aagatgtgccatggaatgaaatatcctatgaacctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaattg |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||| || || | || |||||||||| ||||| |||| | ||||||||||| | |
|
|
| T |
15427631 |
aagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaactcttggaagaaacatgatgttaatatgcctaagcg |
15427532 |
T |
|
| Q |
315 |
ctggagtggtagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgac |
414 |
Q |
| |
|
||| || || ||||| |||| | ||||||| | ||||| | | |||||||||| ||| | |||| || |||| |||| |||| || |||||||| |
|
|
| T |
15427531 |
ttggtgtagtggttcatatgaaccattgtacattgatggattgtctcattggtggtctgtaagtgaaaattgtgatgaacatcttttagtttcatttgat |
15427432 |
T |
|
| Q |
415 |
tttagcaatgaaatatgttgtacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagattaacaaagagacatttggtgg |
514 |
Q |
| |
|
|| ||||| || || | || ||| ||| ||||| |||||||||| | |||||||||||| ||||| | || | || | |||| ||||||| |
|
|
| T |
15427431 |
ttgagcaacgagatgttttttacgacaaccatacctatagacataccgttagacatagatacaaattttcatcttggttttgtgtatagacgattggtgg |
15427332 |
T |
|
| Q |
515 |
tattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggac |
611 |
Q |
| |
|
| | ||| ||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
15427331 |
tgcttaatagatccattgcttcgatctcatggtatttattagataaaactattttttacatatcaattttgggtgaactcggcgtgaaagaatcatggac |
15427232 |
T |
|
| Q |
612 |
caaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagctagtc |
711 |
Q |
| |
|
||||| ||||||||||||||| | | |||||||| ||||||||||||| ||| ||||| |||||||| ||| | || ||||||||||| |||||||| |
|
|
| T |
15427231 |
taaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagatggtaagctagtc |
15427132 |
T |
|
| Q |
712 |
tgttttgatttacatacccaggagactgaaaaacttgg |
749 |
Q |
| |
|
||||| |||| ||| ||| |||||||| ||||||| |
|
|
| T |
15427131 |
tgtttcagtttaagtactcagaagactgaagaacttgg |
15427094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 16 - 749
Target Start/End: Complemental strand, 15519134 - 15518398
Alignment:
| Q |
16 |
tcattgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttat-ttcatgga |
114 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||||| | ||||| ||||| | ||||||||||| |||||||| | || || |||||||| |
|
|
| T |
15519134 |
tcattgtggaacctaactacccatgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggcttc-agttgatgttcatgga |
15519036 |
T |
|
| Q |
115 |
tttggttatgaccatattcaagatgacattaagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacggg |
214 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||||| | || ||| || ||||| | |||| ||||| ||| ||||||||||| || | |
|
|
| T |
15519035 |
tttggttatgactatattaaagatgactttaagattattaggtatatacaatttactccaataagtagtgggcgtcttaaacgtctcaatgtgcaacatg |
15518936 |
T |
|
| Q |
215 |
aagatgtgccatggaatgaaatatcctatgaacctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaattg |
314 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||| || || | || |||||||||| ||||| |||| | ||||||||||| | |
|
|
| T |
15518935 |
aagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaactcttggaagaaacatgatgttaatatgcctaagcg |
15518836 |
T |
|
| Q |
315 |
ctggagtggtagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgac |
414 |
Q |
| |
|
||| || || ||||| |||| | ||||||| | ||||| | | |||||||||| ||| | |||| || |||| |||| |||| || |||||||| |
|
|
| T |
15518835 |
ttggtgtagtggttcatatgaaccattgtacattgatggattgtctcattggtggtctgtaagtgaaaattgtgatgaacatcttttagtttcatttgat |
15518736 |
T |
|
| Q |
415 |
tttagcaatgaaatatgttgtacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagattaacaaagagacatttggtgg |
514 |
Q |
| |
|
|| ||||| || || | || ||| ||| ||||| |||||||||| | |||||||||||| ||||| | || | || | |||| ||||||| |
|
|
| T |
15518735 |
ttgagcaacgagatgttttttacgacaaccatacctatagacataccgttagacatagatacaaattttcatcttggttttgtgtatagacgattggtgg |
15518636 |
T |
|
| Q |
515 |
tattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggac |
611 |
Q |
| |
|
| | ||| ||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
15518635 |
tgcttaatagatccattgcttcgatctcatggtatttattagataaaactattttttacatatcaattttgggtgaactcggcgtgaaagaatcatggac |
15518536 |
T |
|
| Q |
612 |
caaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagctagtc |
711 |
Q |
| |
|
||||| ||||||||||||||| | | |||||||| ||||||||||||| ||| ||||| |||||||| ||| | || ||||||||||| |||||||| |
|
|
| T |
15518535 |
taaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagatggtaagctagtc |
15518436 |
T |
|
| Q |
712 |
tgttttgatttacatacccaggagactgaaaaacttgg |
749 |
Q |
| |
|
||||| |||| ||| ||| |||||||| ||||||| |
|
|
| T |
15518435 |
tgtttcagtttaagtactcagaagactgaagaacttgg |
15518398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 632
Target Start/End: Original strand, 12652271 - 12652339
Alignment:
| Q |
564 |
ttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc |
632 |
Q |
| |
|
|||||||||||| ||||| ||||| | || || ||||||||||||| |||||||||||||||||||| |
|
|
| T |
12652271 |
ttttcacatatcgattttgggtgaaattggtgttgaggaatcgtggactaaactctttgttgttggacc |
12652339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 632
Target Start/End: Original strand, 26607069 - 26607136
Alignment:
| Q |
565 |
tttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc |
632 |
Q |
| |
|
||||| |||||| ||||| | |||||||| ||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
26607069 |
tttcatatatcagttttaggcgaactcggtgtgaaagaatcatggattaaactctttgttgttggacc |
26607136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 204 - 747
Target Start/End: Original strand, 51869646 - 51870192
Alignment:
| Q |
204 |
tgtgcgacgggaagatgtgccatggaatgaaatatcctatgaacctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaat |
303 |
Q |
| |
|
||||| |||| |||||||| || | |||||||||||||||||||||||||||||||||||||| | || |||||||||||| | ||||||| | ||| |
|
|
| T |
51869646 |
tgtgcaacggaaagatgtgtcacgtaatgaaatatcctatgaacctttatgggagatttatagccaaaaatataactcttggagaatacttgatgttaat |
51869745 |
T |
|
| Q |
304 |
atgcctaattgctggagtggtagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacattttttgg |
403 |
Q |
| |
|
|||||| || | || || |||||||||| | ||||| || || ||||||| || ||||| | | || | |||| || | |||| |||||| |||| |
|
|
| T |
51869746 |
atgcctgtgtgtttgattgatagttcaaatcaacgattatatatggatggaatttgccattgatagtctgaaagtgaaaattatgatgaacatttcttgg |
51869845 |
T |
|
| Q |
404 |
tgtcatttgactttagcaatgaaatatgttgtacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagattaacaaagag |
503 |
Q |
| |
|
|||||||| |||| |||||||| | | || |||||| |||||||||||||| |||||||| || || ||||||| | | ||| || || || |
|
|
| T |
51869846 |
tgtcatttaacttgagcaatgagttgtttttaacaacaatcatacccttagacatgccttcagatatgtatcccaattttatttatagttttgtgaatag |
51869945 |
T |
|
| Q |
504 |
acatttggtggtattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaagtgaactcggcgtgaag |
600 |
Q |
| |
|
||| |||||||| || |||||||| |||| | |||| |||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
51869946 |
acacttggtggtgtttaatggatcaattgttacgatatcatggtatttatcagataaaactacttatcacatatcaattttaggtgaactcggcgtgaag |
51870045 |
T |
|
| Q |
601 |
gaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatg |
700 |
Q |
| |
|
|||| | ||| ||||||||| ||||||| |||| ||||||||| ||||||||||||| || |||||| ||||||| || | || ||| ||||| |
|
|
| T |
51870046 |
gaattatagactaaactctttattgttgggtcattttcctacattgatcgtcttattggagcaggaaagaactgtgatatattgttccaaaaaatagatg |
51870145 |
T |
|
| Q |
701 |
gtcagctagtctgttttgatttacatacccaggagactgaaaaactt |
747 |
Q |
| |
|
|||| ||||| | |||||||||| |||||| |||||||| ||||| |
|
|
| T |
51870146 |
gtcaactagtgtattttgatttaagtacccaaaagactgaagaactt |
51870192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 635
Target Start/End: Original strand, 368798 - 368877
Alignment:
| Q |
556 |
acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccatt |
635 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| | || ||||||||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
368798 |
acaactacttttcacatatcaattcttggtgaaattggtgtgaaggaatcatggatcaaactcttcattgttggaccatt |
368877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 635
Target Start/End: Original strand, 361883 - 361959
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccatt |
635 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||| ||||||||||| |||| || ||||| ||||||||||||| |
|
|
| T |
361883 |
actacttttcacatatcaattcttggtgaaatcggtgtgaaggaatcatggataaagctcttcattgttggaccatt |
361959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 7e-39; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 528 - 661
Target Start/End: Complemental strand, 44937901 - 44937765
Alignment:
| Q |
528 |
cattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgtt |
624 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
44937901 |
cattgcttcgatctcgtggtatttattagatacaactacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgtt |
44937802 |
T |
|
| Q |
625 |
gttggaccattgctctacattgagcgtcttattggag |
661 |
Q |
| |
|
||||||||| | | |||||| |||||||||||||||| |
|
|
| T |
44937801 |
gttggaccactaccctacatggagcgtcttattggag |
44937765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 44938411 - 44938118
Alignment:
| Q |
18 |
attgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttatttcatggattt |
117 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||||||| || || | |||||| ||||||||||||| |||| ||||| | ||||||| ||| |
|
|
| T |
44938411 |
attgtggaatccagctacccatgaattcaagaccattcctcccagccccgttgagtctttaccaccttatcgggaggtttcgattggtcttcatgggttt |
44938312 |
T |
|
| Q |
118 |
ggttatgaccatattcaagatgacattaagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacgggaag |
217 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||||||||||| | || || | ||||| | | || ||||| ||| |||| ||||||| |||| |
|
|
| T |
44938311 |
ggttatgaccatattaaagaggactttaagattattaggtacatacaattcacttcaataagtagcggtcgtcttgaacgtctccatgtgcgttatgaag |
44938212 |
T |
|
| Q |
218 |
atgtgccatggaatgaaatatcctatgaacctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaa |
311 |
Q |
| |
|
||||| | ||||| |||||||| ||| |||| ||||||||||||||| || | ||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
44938211 |
atgtgtcgtggaacgaaatatcatatcaacccgaatgggagatttatagcttaaggtgtaattcttggaagaaacttgatgtcaatatgcctaa |
44938118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 524 - 680
Target Start/End: Complemental strand, 44918594 - 44918435
Alignment:
| Q |
524 |
gatccattgcttcgatctcatggtattt---agatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt |
620 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||||| || | ||| ||||||||||| |||||||| |
|
|
| T |
44918594 |
gatccgtttcttcgatctcatggtattattcagatacacctatttttcacatatcaattttaggtgaacttggtgggaaagaatcgtggactaaactctt |
44918495 |
T |
|
| Q |
621 |
tgttgttggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatat |
680 |
Q |
| |
|
||||||||||||| ||| ||| ||| || || |||| |||| ||||| || |||||||| |
|
|
| T |
44918494 |
tgttgttggaccactgccctatattaagtgttttatcggagcagggaaaaatggtgatat |
44918435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 44918899 - 44918806
Alignment:
| Q |
219 |
tgtgccatggaatgaaatatcctatgaacctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaat |
312 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| ||||||||||||||| || | |||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
44918899 |
tgtgccatggaacgaaatatcttatgaacctgaatgggagatttatagcctaaggtgtaactcttggagtaaacttgatatcgatatgcctaat |
44918806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 218 - 312
Target Start/End: Complemental strand, 44912904 - 44912810
Alignment:
| Q |
218 |
atgtgccatggaatgaaatatcctatgaacctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaat |
312 |
Q |
| |
|
|||| |||||||| |||||||| |||||| || ||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
44912904 |
atgttccatggaacgaaatatcttatgaatctgaatgggagatttatagcctaaggtgtaactcttggagtaaacttgatatcaatatgcctaat |
44912810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 565 - 633
Target Start/End: Complemental strand, 44912585 - 44912517
Alignment:
| Q |
565 |
tttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacca |
633 |
Q |
| |
|
||||||||||| ||||| ||||||| || |||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
44912585 |
tttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctttgttgttggacca |
44912517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 563 - 617
Target Start/End: Complemental strand, 44141509 - 44141455
Alignment:
| Q |
563 |
cttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaact |
617 |
Q |
| |
|
||||| ||||||||||| || |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
44141509 |
cttttaacatatcaattctaggtgaactcggtgtgaaggaatcatggaccaaact |
44141455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 34324899 - 34324950
Alignment:
| Q |
106 |
tttcatggatttggttatgaccatattcaagatgacattaagattattaggt |
157 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
34324899 |
tttcatggatttggttatgaccatgttagagatgactataagattattaggt |
34324950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 34325041 - 34325099
Alignment:
| Q |
251 |
tatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcct |
309 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
34325041 |
tatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgcct |
34325099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 559 - 667
Target Start/End: Complemental strand, 39890 - 39782
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg |
658 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| | ||||||||||||| |||||||||| ||||||||| ||| | | ||||||||| ||| | |
|
|
| T |
39890 |
actacttttcacatagcaattttgggtgaactcggcattaaggaatcgtggatcaaactctttactgttggaccgttgtcttgcgttgagcgtcctatcg |
39791 |
T |
|
| Q |
659 |
gagtgggga |
667 |
Q |
| |
|
||||||||| |
|
|
| T |
39790 |
gagtgggga |
39782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 559 - 620
Target Start/End: Complemental strand, 33539 - 33478
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt |
620 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
33539 |
actacttttgacatagcaattttgggtgaactcggcattaaggaatcgtggaccaaactctt |
33478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 556 - 636
Target Start/End: Complemental strand, 32740789 - 32740709
Alignment:
| Q |
556 |
acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattg |
636 |
Q |
| |
|
||||||||||||| | |||||||||| ||||| ||||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32740789 |
acaactacttttctcgtatcaattttgggtgaattcggcataaaggaatcgtggaccaaactcttcattgttggaccattg |
32740709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 556 - 667
Target Start/End: Original strand, 29131311 - 29131422
Alignment:
| Q |
556 |
acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctct-acattgagcgtctt |
654 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | ||| | || |||||||||||||| |||| |||||||||||||| ||| | ||||||||| | |
|
|
| T |
29131311 |
acaactacttttcacatatcaattttgggtgaatttggcataaaagaatcgtggaccaagatcttcattgttggaccattg-tctggcgttgagcgtcct |
29131409 |
T |
|
| Q |
655 |
attggagtgggga |
667 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29131410 |
attggagtgggga |
29131422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 559 - 671
Target Start/End: Complemental strand, 32960805 - 32960693
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg |
658 |
Q |
| |
|
||||||||||| |||||||||| |||| |||| |||||||||| |||| |||||||||| ||||| ||||||||| | ||||||||| ||| | |
|
|
| T |
32960805 |
actacttttcatgtatcaattttggatgaaatcggtatgaaggaatcttggatcaaactctttattgttagaccattgccttgtgttgagcgtcctatgg |
32960706 |
T |
|
| Q |
659 |
gagtggggaagaa |
671 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32960705 |
gagtggggaagaa |
32960693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 632
Target Start/End: Original strand, 29012838 - 29012911
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc |
632 |
Q |
| |
|
|||| |||||||||||||||||| | || |||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
29012838 |
actaattttcacatatcaattttgggggatttcggtgtgaaggaatcatggaccaaactcttcattgttggacc |
29012911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 562 - 630
Target Start/End: Complemental strand, 34258323 - 34258255
Alignment:
| Q |
562 |
acttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttgga |
630 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||||||| ||||| ||||| |||||||| ||| ||||| |
|
|
| T |
34258323 |
acttttcacatatcaattttgaacgaacacggcgtgaaagaatcatggacaaaactcttcgttattgga |
34258255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 559 - 633
Target Start/End: Original strand, 29145302 - 29145376
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacca |
633 |
Q |
| |
|
|||| |||||||||||||||||| ||| | | || |||||||||| ||||||||||||||| || |||||||| |
|
|
| T |
29145302 |
actaattttcacatatcaattttgggtggattaggtatgaaggaatcatggaccaaactctttattcttggacca |
29145376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 620
Target Start/End: Original strand, 29300084 - 29300145
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt |
620 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| | | ||||||||||||||||| ||||| |
|
|
| T |
29300084 |
actacttttcacatatcaattttgggtgagctcagtataaaggaatcgtggaccaatctctt |
29300145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 556 - 620
Target Start/End: Complemental strand, 42637423 - 42637359
Alignment:
| Q |
556 |
acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt |
620 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
42637423 |
acaactacttttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactctt |
42637359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 520 - 632
Target Start/End: Original strand, 30651529 - 30651641
Alignment:
| Q |
520 |
aatggatccattgcttcgatctcatggtatttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactct |
619 |
Q |
| |
|
||||| |||||||||| |||||| |||||| |||||| || || |||||||||||| ||||| ||||||| || |||| ||||| ||||| ||||||| |
|
|
| T |
30651529 |
aatggttccattgctttgatctcttggtatgaagatacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactct |
30651628 |
T |
|
| Q |
620 |
ttgttgttggacc |
632 |
Q |
| |
|
|| || ||||||| |
|
|
| T |
30651629 |
ttattattggacc |
30651641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 566 - 628
Target Start/End: Original strand, 40549282 - 40549344
Alignment:
| Q |
566 |
ttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttg |
628 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
40549282 |
ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg |
40549344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 30651237 - 30651309
Alignment:
| Q |
213 |
ggaagatgtgccatggaatgaaatatcctatgaacctttatgggagatttatagtgtaggatgtaactcttgg |
285 |
Q |
| |
|
||||||||||| | || |||||||||| |||| || | ||||||||||||||||| || |||||||| ||||| |
|
|
| T |
30651237 |
ggaagatgtgcaacgggatgaaatatcttatgcacgtgtatgggagatttatagtttaagatgtaacacttgg |
30651309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 31777583 - 31777655
Alignment:
| Q |
213 |
ggaagatgtgccatggaatgaaatatcctatgaacctttatgggagatttatagtgtaggatgtaactcttgg |
285 |
Q |
| |
|
||||||||||| | | |||||||||| |||| |||| ||||||||||||||||| || |||||||| ||||| |
|
|
| T |
31777583 |
ggaagatgtgcaacgagatgaaatatcttatgcacctgtatgggagatttatagtctacgatgtaacacttgg |
31777655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 30651131 - 30651181
Alignment:
| Q |
107 |
ttcatggatttggttatgaccatattcaagatgacattaagattattaggt |
157 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
30651131 |
ttcatggatttggttatgaccatgttagagatgactataagattattaggt |
30651181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 31777477 - 31777527
Alignment:
| Q |
107 |
ttcatggatttggttatgaccatattcaagatgacattaagattattaggt |
157 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
31777477 |
ttcatggatttggttatgaccatgttagagatgactataagattattaggt |
31777527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 30249508 - 30249565
Alignment:
| Q |
252 |
atgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcct |
309 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
30249508 |
atgggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgcct |
30249565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 520 - 620
Target Start/End: Original strand, 25628154 - 25628254
Alignment:
| Q |
520 |
aatggatccattgcttcgatctcatggtatttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactct |
619 |
Q |
| |
|
||||| |||||||||| |||||| |||||| ||| || || || |||||||||||| ||||| ||||||| || |||| ||||| ||||| ||||||| |
|
|
| T |
25628154 |
aatggttccattgctttgatctcttggtatggagacacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactct |
25628253 |
T |
|
| Q |
620 |
t |
620 |
Q |
| |
|
| |
|
|
| T |
25628254 |
t |
25628254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 17225 - 17152
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc |
632 |
Q |
| |
|
|||||||||||||| || ||| | |||||||||| |||||||| || ||||| |||||||| ||| ||||||| |
|
|
| T |
17225 |
actacttttcacatttctattctgggtgaactcggtgtgaaggagtcttggactaaactcttcgttattggacc |
17152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 620
Target Start/End: Complemental strand, 44550553 - 44550492
Alignment:
| Q |
559 |
actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt |
620 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||| |||||| ||| ||||| |||||||| |
|
|
| T |
44550553 |
actacttttcaaatatcaattttaggtgaattcggtgtgaagaaattatggactaaactctt |
44550492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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