View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5774_low_5 (Length: 553)
Name: NF5774_low_5
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 7 - 536
Target Start/End: Original strand, 39793636 - 39794178
Alignment:
| Q |
7 |
gtgagatgaagttgggatgttgggagtgtgatcatgtgtagattgttgggtgtgactgtgtttaggggttggaccggtttgagcaccatttttacttgaa |
106 |
Q |
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| T |
39793636 |
gtgaaatgaagttgggatgttgggagtgtgatcatgtgtagattgttgggtgtgactgtgtttaggggttggaccggtttgagcaccatttttacttgaa |
39793735 |
T |
|
| Q |
107 |
tttttctaattcggctagttgttctttcatatcacaattttggttaaggtggccatatcaaccatagattttgtagatgacgtggagtctgtcatattat |
206 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39793736 |
tttttctaattcggctggttgttctttcatatcacaattttggttaaggtggccatatcaaccatagattttgtagatgacgtggagtctgacatattat |
39793835 |
T |
|
| Q |
207 |
tgtgtgatctacttttacatacatataagtaaattgttgtgactagtagaagaccgcgctaataaatcatttaggggccattagagatggtattttcttt |
306 |
Q |
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| T |
39793836 |
tgtgtgatctacttttacatacagataagtaaattgttgtgactagtagaagaccgcggtaataaatcattcaggggccattagagatggtcttttcttt |
39793935 |
T |
|
| Q |
307 |
atctgcaacttgatcaaacttcaccatgtaaaaatcgttgttgttgttatccattgtttcaaaattgtgttggagtttccacatttctttcgtatgtttt |
406 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39793936 |
atccgcaacttgatcaaacttcaccatgtaaaaatcgtttttgttgttatccattgtttcaaaattgtgttggagtttccacatttctttagtatgtttt |
39794035 |
T |
|
| Q |
407 |
tcattttgtttgagcc-------------aagagtttgaccaccaaatagtcttttcaagggttgtgcatggacttgaaaatgtttgggtcaaggaaaac |
493 |
Q |
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| T |
39794036 |
tcattttgtttgagccaaggtttatcctgaagagtttgaccaccaaatagtcttttcaagggttgtgcatgtacttgaaaatgtttgggtcaaggaaaac |
39794135 |
T |
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| Q |
494 |
ttttgggagtagtcatttaccattctcatgttctagttgaacc |
536 |
Q |
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| T |
39794136 |
ttttgggagtagtcatttaccattctcatgttctagttgaacc |
39794178 |
T |
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