View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5774_low_8 (Length: 430)
Name: NF5774_low_8
Description: NF5774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5774_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 10 - 412
Target Start/End: Complemental strand, 26952093 - 26951691
Alignment:
| Q |
10 |
attattctaagcattgggttctaaattaattcattgtctgggtattcacattcattcttgcagccttggtatgaaagattcatggggacccttaaaggct |
109 |
Q |
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| T |
26952093 |
attattctaagcattgggttctaaattaattcattgtctgggtattcacattcattcttgcagccttggtatgaaagattcatggggacccttaaaggct |
26951994 |
T |
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| Q |
110 |
ttggctgctgccagtgttataaatggaattggtgatatacttttatgcagctttttaggctatggtatagcaggggcagcatgggctacaatggtgtcac |
209 |
Q |
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| T |
26951993 |
ttggctgctgccagtgttataaatggaattggtgatatacttttatgcagctgtttaggctatggtatagcgggggcagcatgggctacaatggtgtcac |
26951894 |
T |
|
| Q |
210 |
aagtatgctgagaaaacactgcacgcgtccttatactttcagtgcgttatatgcagttctctctattttcgatgcactaatatatgtatatactgctttt |
309 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26951893 |
aagtatgctgagaaaacactgcacgcgtcgttatactttcagtgcgttatatgcagttctctctattttcgatgcactaatatatgtagatactgctttt |
26951794 |
T |
|
| Q |
310 |
cttctgccttttccatttctaggttgtaaccgcgtatatgatgattcagaccctaaacaagaggggatataatgcatttgccttctccattccttcaatg |
409 |
Q |
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| T |
26951793 |
cttctgccttttccatttctaggttgtaaccgcgtatatgatgattcagaccctaaacaagaggggatataatgcatttgccttctccattccttcaatg |
26951694 |
T |
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| Q |
410 |
aag |
412 |
Q |
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||| |
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| T |
26951693 |
aag |
26951691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 26989329 - 26989134
Alignment:
| Q |
22 |
attgggttctaaattaattcattgtctgggtattcacattcattcttgcagccttggtatgaaagattcatggggacccttaaaggctttggctgctgcc |
121 |
Q |
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| T |
26989329 |
attgggttgtcatttaattcatattcttggtatcgacattctttcacgcagtcttggtatgaaagattcttggggacccttgaaggctttggctgctgcc |
26989230 |
T |
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| Q |
122 |
agtgttataaatggaattggtgatatacttttatgcagctttttaggctatggtatagcaggggcagcatgggctacaatggtgtcacaagtatgc |
217 |
Q |
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| T |
26989229 |
agtattataaatggaattggtgatataattctgtgcagatatttaaactatgggattgctggggctgcatgggctacattggcatcccaagtatgc |
26989134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 27003897 - 27003730
Alignment:
| Q |
50 |
ggtattcacattcattcttgcagccttggtatgaaagattcatggggacccttaaaggctttggctgctgccagtgttataaatggaattggtgatatac |
149 |
Q |
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||||| |||||| ||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
27003897 |
ggtatccacattttttcatgcagtcttggtatgaaagattcttggggacccttgaaggctttggccgctgccagtattataaatggaattggtgatataa |
27003798 |
T |
|
| Q |
150 |
ttttatgcagctttttaggctatggtatagcaggggcagcatgggctacaatggtgtcacaagtatgc |
217 |
Q |
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|| | ||||| | ||||||||||| || || ||||| |||||||||||| ||| || ||||||||| |
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| T |
27003797 |
ttctgtgcagatacttaggctatgggattgctggggctgcatgggctacattggcatcccaagtatgc |
27003730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 26944293 - 26944151
Alignment:
| Q |
74 |
cttggtatgaaagattcatggggacccttaaaggctttggctgctgccagtgttataaatggaattggtgatatacttttatgcagctttttaggctatg |
173 |
Q |
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||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||| |||| |||| || ||||||||||| |
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| T |
26944293 |
cttggtatgaaagattcctggggacccttgaaagctttagctgctgccagtgttataaatggtgttggtgatatagttttgtgcacctatttaggctatg |
26944194 |
T |
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| Q |
174 |
gtatagcaggggcagcatgggctacaatggtgtcacaagtatg |
216 |
Q |
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| || |||||||| |||||||| ||||||| || |||||||| |
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| T |
26944193 |
gaattgcaggggctgcatgggccacaatggcatcgcaagtatg |
26944151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 26978366 - 26978515
Alignment:
| Q |
69 |
gcagccttggtatgaaagattcatggggacccttaaaggctttggctgctgccagtgttataaatggaattggtgatatacttttatgcagctttttagg |
168 |
Q |
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|||| |||||||||||||| || ||||||||| | ||||||||||||| ||| ||| ||||||||||||||||||| || || | ||||| | |||||| |
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| T |
26978366 |
gcagtcttggtatgaaagactcttggggacccctgaaggctttggctgttgctagtattataaatggaattggtgacatcattctgtgcagatatttagg |
26978465 |
T |
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| Q |
169 |
ctatggtatagcaggggcagcatgggctacaatggtgtcacaagtatgct |
218 |
Q |
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|||||| || || ||||| || ||||||||| ||| ||||||||||||| |
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| T |
26978466 |
ctatgggattgctggggctgcttgggctacattggcatcacaagtatgct |
26978515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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