View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5775-Insertion-11 (Length: 496)
Name: NF5775-Insertion-11
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775-Insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 121 - 395
Target Start/End: Complemental strand, 631201 - 630895
Alignment:
| Q |
121 |
gagtggaatcttatttatgcttgttttgattattattggtgacttcatggatcattgttaattgatgttatttgcactagtttgtttgttagttagttag |
220 |
Q |
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| T |
631201 |
gagtggaatcttatttatgcttgttttgattattattggtgacttcatggatcattgttaattgatgttatttgcactagtttgtttgttagttag---- |
631106 |
T |
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| Q |
221 |
agttgnnnnnnnctatcgctgtgcatttcaatttacatagtccacagtagtcatgcatt-----------------gtgtttgaacagaacttttcttgt |
303 |
Q |
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| T |
631105 |
agttgtttttttctctcgctgtgcatttcgatttacatagtccacagtagtcatgcatttctgttattgataaattgtgtttcaacagaacttttcttgt |
631006 |
T |
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| Q |
304 |
tcaattacagt-------------------aaatgaatggttttaacgaactcaggttttaaggtttagtgcacttgtaagcaaactatcatgcaagtta |
384 |
Q |
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| T |
631005 |
tcaatcacagtaaaggtgtgaattgcacacaaatgaatggttttaacgaactcaggttttaaggtttagtgcacttgtaagcaaactatcatgcaagtta |
630906 |
T |
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| Q |
385 |
gaccatataga |
395 |
Q |
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| T |
630905 |
gaccatataga |
630895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 631387 - 631265
Alignment:
| Q |
8 |
tcaaccgccctctattgtcaaggggacaaaacgtaactcaggttcccttatattttgattgaaatatgtacttcactgaagcatgatgcttgtagttgtt |
107 |
Q |
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| T |
631387 |
tcaaccaccctctattgccaaggggacaaaacgtaactcaggttcccttatattttgattgaaatatgtacttcactgaagcatgatgcttgtagttgtt |
631288 |
T |
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| Q |
108 |
tctcttcatttgggagtggaatc |
130 |
Q |
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| T |
631287 |
tctcttgatttgggggcggaatc |
631265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 405 - 481
Target Start/End: Complemental strand, 630630 - 630554
Alignment:
| Q |
405 |
gcttctttcttgtaaactcaataacccaaatcaaaatcaatctttcttctttaagcatgaaaatactcaatcatcca |
481 |
Q |
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| T |
630630 |
gcttctttcttgtaaactcaataacccaaatcaaaatcaatctttcttctttaagcataaaaatactcaatcatcca |
630554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 16947866 - 16947833
Alignment:
| Q |
155 |
attggtgacttcatggatcattgttaattgatgt |
188 |
Q |
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| T |
16947866 |
attggtgacttcatggatcattgttaattaatgt |
16947833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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