View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5775-Insertion-12 (Length: 493)

Name: NF5775-Insertion-12
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5775-Insertion-12
NF5775-Insertion-12
[»] chr2 (1 HSPs)
chr2 (8-490)||(45092272-45092743)
[»] chr7 (7 HSPs)
chr7 (231-489)||(134111-134375)
chr7 (231-489)||(38597019-38597278)
chr7 (382-489)||(11476239-11476346)
chr7 (333-458)||(47798121-47798246)
chr7 (239-343)||(20944886-20944990)
chr7 (386-489)||(20944759-20944862)
chr7 (244-343)||(11476356-11476455)
[»] chr3 (1 HSPs)
chr3 (228-473)||(21082275-21082521)
[»] chr8 (2 HSPs)
chr8 (228-331)||(29805411-29805514)
chr8 (228-470)||(1260951-1261193)
[»] chr6 (3 HSPs)
chr6 (348-470)||(26482635-26482758)
chr6 (253-458)||(8363107-8363313)
chr6 (274-366)||(28874977-28875069)
[»] chr4 (2 HSPs)
chr4 (239-472)||(10093433-10093665)
chr4 (309-413)||(3766335-3766439)
[»] chr1 (2 HSPs)
chr1 (348-470)||(34383820-34383942)
chr1 (310-359)||(18747590-18747639)


Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Complemental strand, 45092743 - 45092272
Alignment:
Q  8 gccttttaccaagcaaagtaccactgctgctcaatttctagatgacaataatgtgactgcacactaatttcattgacaggaatcattcaaatctgaaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45092743 gccttttaccaagcaaagtaccactgctgctcaatttctagatgacaataatgtgactgcacactaatttcattgacaggaatcattcaaatctgaaaat 45092644  T
Q  108 aactatccacgtaacgtttcaatgattcccgttcatcatcaatggtaccaccggtacttcattttaactagacatagattagatatataggcaaatgtta 207  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45092643 aactatccacgtaacgtttcaatgattcacgttcatcatcaatggtacccccggtacttcattttaactagacatagattatatatataggcaaatgtta 45092544  T
Q  208 gctttcagtgtacatgcatgtgaatgaaaataaaagaatcgttacaagaaatttaaaggattgacccaccacgaatgatagtcaaaagtaaaaattttat 307  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||| |||||||||||||||||    
T  45092543 ggtttcagtgtacatgcatgtgaatgaaaataaaagaatcgttacaagaaatttaaaggattgaccc-----------tagttaaaagtaaaaattttat 45092455  T
Q  308 acttcgctttcaaccaatcaaaaggttgagccttaacgtcgtcaagcaagtgatgaataaaattatgtgaattcttgaagattttggcatttctttcttt 407  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45092454 acttcgctttcaaccaattaaaaggttgagccttaacgtcgtcaagcaagtgatgaataaaattatgtgaattcttgaagattttggcatttctttcttt 45092355  T
Q  408 ccataagatctaagctgaagaaaaccaaactaaacgagtaatgtctttctttcgtttagaaaaaccaccaagggaaccaaacc 490  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45092354 tcataagatctaagctgaagaaaaccaaactaaacgagtaatgtctttctttcgtttagaaaaaccaccaaaggaaccaaacc 45092272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 231 - 489
Target Start/End: Complemental strand, 134375 - 134111
Alignment:
Q  231 atgaaaataa-aagaatcgttacaagaaatttaaaggattgacccaccacgaatgatagtcaaaagtaaaaattttatacttcgctttcaaccaatcaaa 329  Q
    |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| || | |||| | |||||||||||||||| ||||    
T  134375 atgaaaataagaagaatcattacaagaaatttaaaggattgagccaccacgaatggtagtcaaaagcaagatttttgtgcttcgctttcaaccaaccaaa 134276  T
Q  330 aggttgagccttaacgtcgtcaagcaagtgatgaataaaattatgtgaattcttgaagattttggcatttctttctttccataagatctaagctgaagaa 429  Q
    |  ||||||||||| || |||||||||||| ||||||  ||||| |||||||||||||||| | |||||||||||||||||||||| | |||||||||||    
T  134275 atattgagccttaatgttgtcaagcaagtggtgaatagtattatttgaattcttgaagattcttgcatttctttctttccataagacccaagctgaagaa 134176  T
Q  430 aacc-----aaactaaacgagtaatgtctttctttcgtttagaaaaaccaccaagggaaccaaac 489  Q
    ||||     ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  134175 aaccaaaccaaactaaacgagtaatgtctttctttcgtttagaaaaaccaccaaaggaaccaaac 134111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 231 - 489
Target Start/End: Complemental strand, 38597278 - 38597019
Alignment:
Q  231 atgaaaataa-aagaatcgttacaagaaatttaaaggattgacccaccacgaatgatagtcaaaagtaaaaattttatacttcgctttcaaccaatcaaa 329  Q
    |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| ||  |||||| || | |||| | |||||||||||||||| ||||    
T  38597278 atgaaaataagaagaatcattacaagaaatttaaaggattgatccaccacgaatggtaaacaaaagcaagatttttgtgcttcgctttcaaccaaccaaa 38597179  T
Q  330 aggttgagccttaacgtcgtcaagcaagtgatgaataaaattatgtgaattcttgaagattttggcatttctttctttccataagatctaagctgaagaa 429  Q
    || ||||||||||| || |||||||||||| ||||||  ||||  |||||||||||||||  | |||||||||||||||||||||| | |||||||||||    
T  38597178 agattgagccttaatgttgtcaagcaagtggtgaatagtattacttgaattcttgaagatcctagcatttctttctttccataagacccaagctgaagaa 38597079  T
Q  430 aaccaaactaaacgagtaatgtctttctttcgtttagaaaaaccaccaagggaaccaaac 489  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  38597078 aaccaaactaaacgaataatgtctttcttttgtttagaaaaaccaccaaaggaaccaaac 38597019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 382 - 489
Target Start/End: Complemental strand, 11476346 - 11476239
Alignment:
Q  382 ttgaagattttggcatttctttctttccataagatctaagctgaagaaaaccaaactaaacgagtaatgtctttctttcgtttagaaaaaccaccaaggg 481  Q
    ||||||||| ||||||||| || ||||||||||  | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||    
T  11476346 ttgaagattctggcatttcattatttccataaggcccaagctgaagaaaaccaaactaaatgactaatgtctttctttcgtttagaaaaaccaccaaagg 11476247  T
Q  482 aaccaaac 489  Q
    ||||||||    
T  11476246 aaccaaac 11476239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 333 - 458
Target Start/End: Original strand, 47798121 - 47798246
Alignment:
Q  333 ttgagccttaacgtcgtcaagcaagtgatgaataaaattatgtgaattcttgaagattttggcatttctttctttccataagatctaagctgaagaaaac 432  Q
    |||||||||||  | ||||||||| |||||||||  ||| ||||||||||||||| |||| |||||||||||||||||||| | | ||| ||||| ||||    
T  47798121 ttgagccttaatattgtcaagcaattgatgaatagtattttgtgaattcttgaagctttttgcatttctttctttccataaaacccaaggtgaagcaaac 47798220  T
Q  433 caaactaaacgagtaatgtctttctt 458  Q
    || ||||||||| |||| ||||||||    
T  47798221 cacactaaacgaataatatctttctt 47798246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 343
Target Start/End: Complemental strand, 20944990 - 20944886
Alignment:
Q  239 aaaagaatcgttacaagaaatttaaaggattgacccaccacgaatgatagtcaaaagtaaaaattttatacttcgctttcaaccaatcaaaaggttgagc 338  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |  || ||||| |||||| |||||| ||||||    
T  20944990 aaaagaataattacaagaaatttaaaggattgacccaccacgaatggtagtcaaaagtaagatttttgtgatttgcttttaaccaaccaaaagattgagc 20944891  T
Q  339 cttaa 343  Q
    |||||    
T  20944890 cttaa 20944886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 386 - 489
Target Start/End: Complemental strand, 20944862 - 20944759
Alignment:
Q  386 agattttggcatttctttctttccataagatctaagctgaagaaaaccaaactaaacgagtaatgtctttctttcgtttagaaaaaccaccaagggaacc 485  Q
    ||||| || |||||||||||||| |||||| | ||| ||||||||| ||||  |||||| || |||||||||||||||||||||||||||||| ||||||    
T  20944862 agattctgacatttctttctttctataagacccaaggtgaagaaaatcaaatcaaacgaatactgtctttctttcgtttagaaaaaccaccaaaggaacc 20944763  T
Q  486 aaac 489  Q
    ||||    
T  20944762 aaac 20944759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 343
Target Start/End: Complemental strand, 11476455 - 11476356
Alignment:
Q  244 aatcgttacaagaaatttaaaggattgacccaccacgaatgatagtcaaaagtaaaaattttatacttcgctttcaaccaatcaaaaggttgagccttaa 343  Q
    |||| |||||| |||||||||||||| ||||| ||| | | ||||||||||| || | |||| | ||||||||||||||||||||||| |||||||||||    
T  11476455 aatcattacaaaaaatttaaaggattaacccatcacaactaatagtcaaaagcaagatttttgtgcttcgctttcaaccaatcaaaagattgagccttaa 11476356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 228 - 473
Target Start/End: Complemental strand, 21082521 - 21082275
Alignment:
Q  228 tgaatgaaaataaaa-gaatcgttacaagaaatttaaaggattgacccaccacgaatgatagtcaaaagtaaaaattttatacttcgctttcaaccaatc 326  Q
    ||||||||||||||| ||| | |||||||||| | || || ||   |||||||||||||||||||||||  | | |||| |  ||||||||||||||| |    
T  21082521 tgaatgaaaataaaaagaaacattacaagaaactcaaggggttagtccaccacgaatgatagtcaaaagccagatttttgtgtttcgctttcaaccaacc 21082422  T
Q  327 aaaaggttgagccttaacgtcgtcaagcaagtgatgaataaaattatgtgaattcttgaagattttggcatttctttctttccataagatctaagctgaa 426  Q
    ||||| |||||||||   || |||||||||||| ||||||| ||| || ||||||||||||||| | |||||||||||||||||||| | | ||||||||    
T  21082421 aaaagattgagccttgttgttgtcaagcaagtggtgaataatattttgagaattcttgaagattcttgcatttctttctttccataaaacccaagctgaa 21082322  T
Q  427 gaaaaccaaactaaacgagtaatgtctttctttcgtttagaaaaacc 473  Q
    |||||||||||||||||| | ||||||||||  ||||||| ||||||    
T  21082321 gaaaaccaaactaaacgaattatgtctttctcgcgtttagtaaaacc 21082275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 228 - 331
Target Start/End: Original strand, 29805411 - 29805514
Alignment:
Q  228 tgaatgaaaataaaagaatcgttacaagaaatttaaaggattgacccaccacgaatgatagtcaaaagtaaaaattttatacttcgctttcaaccaatca 327  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||| ||||||| ||| |||||| ||    
T  29805411 tgaatgaaaataaaagaattgttacaagaaatttaaaagattgacccaccatgaatgatagtcaaaagcaaaatttttgtacttcgtttttaaccaacca 29805510  T
Q  328 aaag 331  Q
    ||||    
T  29805511 aaag 29805514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 228 - 470
Target Start/End: Complemental strand, 1261193 - 1260951
Alignment:
Q  228 tgaatgaaaataaaa-gaatcgttacaagaaatttaaaggattgacccaccacgaatgatagtcaaaagtaaaaattttatacttcgctttcaaccaatc 326  Q
    ||||||||||||||| ||| | | || ||| ||||||||||||   ||||||| |||| |||||||||| || | |||| | |||||||||||||||| |    
T  1261193 tgaatgaaaataaaaagaaccatcacgagacatttaaaggattagtccaccacaaatggtagtcaaaagcaagagttttgtgcttcgctttcaaccaacc 1261094  T
Q  327 aaaaggttgagccttaacgtcgtcaagcaagtgatgaataaaattatgtgaattcttgaagattttggcatttctttctttccataagatctaagctgaa 426  Q
    ||||  ||| || |||| || ||||| |||||  ||||||  ||| |||||| ||||||||||| |  ||| |||||||||| |||| | | |||| |||    
T  1261093 aaaatattgcgc-ttaatgttgtcaaacaagtagtgaatagtattttgtgaactcttgaagattcttacatatctttctttcaataaaacccaagcagaa 1260995  T
Q  427 gaaaaccaaactaaacgagtaatgtctttctttcgtttagaaaa 470  Q
    ||||| |||||||||||| |||||| |||||| | |||||||||    
T  1260994 gaaaatcaaactaaacgaataatgtttttcttgcatttagaaaa 1260951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 348 - 470
Target Start/End: Original strand, 26482635 - 26482758
Alignment:
Q  348 gtcaagcaagtgatgaataaaattatgtgaattcttgaagattttggcatttctttctttccat-aagatctaagctgaagaaaaccaaactaaacgagt 446  Q
    |||||||||||||||||||  ||| |||||||||||||||||| | ||||||||||| || ||| || |   || |||||||||||||||||||||||||    
T  26482635 gtcaagcaagtgatgaatagtattttgtgaattcttgaagattcttgcatttctttcatttcataaacacacaaactgaagaaaaccaaactaaacgagt 26482734  T
Q  447 aatgtctttctttcgtttagaaaa 470  Q
     ||||||||||| |||||| ||||    
T  26482735 gatgtctttcttgcgtttaaaaaa 26482758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 458
Target Start/End: Complemental strand, 8363313 - 8363107
Alignment:
Q  253 aagaaatttaaaggattgacccaccacgaatgatagtcaaaagtaaaaattttatacttcgctttcaaccaatcaaaaggttgagccttaacgtcgtcaa 352  Q
    |||||||||||| ||||   ||||||||||| ||||| ||||| || | ||| ||  || ||||||||||||  |||||  |||||||||| || |||||    
T  8363313 aagaaatttaaaagattattccaccacgaatcatagttaaaagcaagattttcatgttttgctttcaaccaactaaaagaatgagccttaatgttgtcaa 8363214  T
Q  353 gc-aagtgatgaataaaattatgtgaattcttgaagattttggcatttctttctttccataagatctaagctgaagaaaaccaaactaaacgagtaatgt 451  Q
    || || || ||||||  ||| || ||||||||| || |||| || ||||||||| ||||||| | |  || |||||||||| |||||||| || ||||||    
T  8363213 gcaaaatggtgaatagtattttgcgaattcttggagctttttgcttttctttctatccataaaacccgaggtgaagaaaacaaaactaaaggaataatgt 8363114  T
Q  452 ctttctt 458  Q
     ||||||    
T  8363113 ttttctt 8363107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 366
Target Start/End: Complemental strand, 28875069 - 28874977
Alignment:
Q  274 caccacgaatgatagtcaaaagtaaaaattttatacttcgctttcaaccaatcaaaaggttgagccttaacgtcgtcaagcaagtgatgaata 366  Q
    |||||| ||||||||||||||  || | |||| | |||||||||||||||| |||||| ||||| ||| | || ||||| |||||| ||||||    
T  28875069 caccaccaatgatagtcaaaaacaagatttttgtgcttcgctttcaaccaaccaaaagattgagtctttatgttgtcaaacaagtgttgaata 28874977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 472
Target Start/End: Complemental strand, 10093665 - 10093433
Alignment:
Q  239 aaaagaatcgttacaagaaatttaaaggattgacccaccacgaatgatagtcaaaagtaaaaattttatacttcgctttcaaccaatcaaaaggttgagc 338  Q
    ||||||| | |||||||||||| || || ||   ||||||||||| ||| |||||||||| | || | |  ||| |||||||||||  | ||| ||||||    
T  10093665 aaaagaaacattacaagaaattcaatgggttagtccaccacgaatcataatcaaaagtaagatttctgtgtttcactttcaaccaactagaagattgagc 10093566  T
Q  339 cttaacgtcgtcaagcaagtgatgaataaaattatgtgaattcttgaagattttggcatttctttctttccataagatctaagctgaagaaaaccaaact 438  Q
    ||| | || ||||| |||||| ||||||  ||| ||  |||||||||||||| |  || ||||||||||| |||| |   ||| |||||| |  ||||||    
T  10093565 cttgatgttgtcaaacaagtggtgaatagtattttgacaattcttgaagattattccaattctttctttc-ataaaactcaagttgaagagactcaaact 10093467  T
Q  439 aaacgagtaatgtctttctttcgtttagaaaaac 472  Q
    |||| | |||| |||||||| |||||||||||||    
T  10093466 aaacaaataatatctttcttgcgtttagaaaaac 10093433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 413
Target Start/End: Complemental strand, 3766439 - 3766335
Alignment:
Q  309 cttcgctttcaaccaatcaaaaggttgagccttaacgtcgtcaagcaagtgatgaataaaattatgtgaattcttgaagattttggcatttctttctttc 408  Q
    |||||||||||||||| || | | |||  ||||||  | ||||||||| || || ||| ||||||||  ||||||||||||| | |||||||||||||||    
T  3766439 cttcgctttcaaccaaccataggattgcaccttaattttgtcaagcaattgttggatagaattatgtttattcttgaagattattgcatttctttctttc 3766340  T
Q  409 cataa 413  Q
    |||||    
T  3766339 cataa 3766335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 470
Target Start/End: Original strand, 34383820 - 34383942
Alignment:
Q  348 gtcaagcaagtgatgaataaaattatgtgaattcttgaagattttggcatttctttctttccataagatctaagctgaagaaaaccaaactaaacgagta 447  Q
    |||||||||||| ||||||  ||| |||||||||  ||||||| | |||||||||||||||||| | |   ||||| |||| || || ||||||  | ||    
T  34383820 gtcaagcaagtggtgaatattattttgtgaattccagaagattcttgcatttctttctttccatgaaactcaagctaaagataatcacactaaataaata 34383919  T
Q  448 atgtctttctttcgtttagaaaa 470  Q
    |||||||||||  ||||||||||    
T  34383920 atgtctttcttatgtttagaaaa 34383942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 18747590 - 18747639
Alignment:
Q  310 ttcgctttcaaccaatcaaaaggttgagccttaacgtcgtcaagcaagtg 359  Q
    |||||||||||||| ||||||| ||| |||||||||| |||||| |||||    
T  18747590 ttcgctttcaaccagtcaaaagattgcgccttaacgttgtcaagaaagtg 18747639  T

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