View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5775-Insertion-14 (Length: 362)
Name: NF5775-Insertion-14
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775-Insertion-14 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 359
Target Start/End: Original strand, 48643769 - 48644121
Alignment:
| Q |
8 |
tctatttgtagttggatttaataaactaatatgcttatgagctggttttgctaatgttattcataacacgagtaaattaaaaatgtctggtcaactttct |
107 |
Q |
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| T |
48643769 |
tctatttgtagttggatttaataaactaatatgcttatgagctggttttgctaatgttattcataacacgagtaaattaaaaatgtctggtcaactttct |
48643868 |
T |
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| Q |
108 |
ttgcaggttacgctttcatcatcaaatttgataattaagaagaaaaacaagaggaagnnnnnnnnn-tgatgaatatattttcagtgtcgggtgctgttg |
206 |
Q |
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| T |
48643869 |
ttgcaggttacgctttcttcatcaaatttgataattaagaagaaaaataagaggaagaaaaaaaaaatgatgaatatattttcagtgtcgggtgctgttg |
48643968 |
T |
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| Q |
207 |
cttgcaagcctctagtgagtttccaacctccactaatggataacaattcattgtttcaacaacatcgtaacaaggagaaagtacttgtgatcatgggcgc |
306 |
Q |
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| T |
48643969 |
cttgcaagcctctagtgagtttccaacctccactaatggataacaattcattgtttcaacaacatcgtaacaaggagaaagtacttgtgatcatgggcgc |
48644068 |
T |
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| Q |
307 |
caccgcaaccgggaaatccaagttggcaatagatttagcaacacattttccac |
359 |
Q |
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| T |
48644069 |
caccgcaaccgggaaatccaagttggcaatagatttagcaacacattttccac |
48644121 |
T |
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