View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5775-Insertion-18 (Length: 194)
Name: NF5775-Insertion-18
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775-Insertion-18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 7652624 - 7652438
Alignment:
| Q |
8 |
gcctcttcctccattgtcgttaattgcaacttccggtatgcctgaaacagcttgcatgttacctcccatttggcccatcattggcaagttgtttcccatt |
107 |
Q |
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| T |
7652624 |
gcctcttcctccattgtcgttaattgcaacttccggtatgcctgaaacagctggcatgttacctcccatttggcccatcattggcaagttgttttccatt |
7652525 |
T |
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| Q |
108 |
gctcctcctcccattaccataccactcatgttaccatcaatgtggcatgcattaggatgaccataacccatgtttgggaggccatta |
194 |
Q |
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| T |
7652524 |
gctcctcctcccattaccataccactcatattaccatcaatgtggcatgcattaggatgaccaccacccatgtttggaagtccatta |
7652438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 7658020 - 7657860
Alignment:
| Q |
40 |
ccggtatgcctgaaacagcttgcatgttacctcccatttggcccatcattggcaagttgtttcccattgctcctc---ctcccattaccataccactca- |
135 |
Q |
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| T |
7658020 |
ccggtaggccttgaacagctggcatgttacctcccatttgactcatcattgccatgttgtttcccattgctcctcctcctcccattggcataccactcat |
7657921 |
T |
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| Q |
136 |
--tgttaccatcaatgtggcatgcattaggatgaccataacccatgtttgggaggccatta |
194 |
Q |
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| T |
7657920 |
attgttagaaaccatgtggcccacattaggatgaccaccacccatgtttggaagtccatta |
7657860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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