View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5775-Insertion-22 (Length: 87)
Name: NF5775-Insertion-22
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775-Insertion-22 |
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Alignment Details
Target: chr2 (Bit Score: 46; Significance: 7e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-18
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 4246000 - 4245951
Alignment:
| Q |
20 |
aggacaacttcaaggaaagcagacagaaaagcttcaccaacaacagccat |
69 |
Q |
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| T |
4246000 |
aggacagcttcaaggaaagcagacagaaaagcttcaccaacaacagccat |
4245951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 4253029 - 4252979
Alignment:
| Q |
7 |
agcgagccggtcgaggacaacttcaaggaaagcagacagaaaagcttcacc |
57 |
Q |
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| T |
4253029 |
agcgagcctgtcgaggacaacttcaatgaaagcagacagaaatgcttcacc |
4252979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 4315484 - 4315527
Alignment:
| Q |
20 |
aggacaacttcaaggaaagcagacagaaaagcttcaccaacaac |
63 |
Q |
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| T |
4315484 |
aggacaacttcaatgaaagcagacaaaaaagcttcaccaacaac |
4315527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 4306613 - 4306665
Alignment:
| Q |
11 |
agccggtcgaggacaacttcaaggaaagcagacagaaaagcttcaccaacaac |
63 |
Q |
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| T |
4306613 |
agcctgtcgaggacaacttcaatgaaagcggacagaaatgattcacccacaac |
4306665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 41932445 - 41932395
Alignment:
| Q |
11 |
agccggtcgaggacaacttcaaggaaagcagacagaaaagcttcaccaaca |
61 |
Q |
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| T |
41932445 |
agcctgtcaaggacaacttcaatgaaagctgacagaaatgcttcaccaaca |
41932395 |
T |
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