View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5775-Insertion-3 (Length: 768)
Name: NF5775-Insertion-3
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775-Insertion-3 |
 | |
|
| [»] chr6 (7 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 607; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 12 - 768
Target Start/End: Original strand, 33226501 - 33227279
Alignment:
| Q |
12 |
tttcttagaagggtgttcagaaggacccttcattgaaacatcc--------------aaaacattattgtttaccacagtaaataactacttccactgaa |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33226501 |
tttcttagaagggtgttcagaaggacccttcattgaaacatccctaataggtcataaaaaccattattgtttaccacagtaa-taactacttccactgaa |
33226599 |
T |
|
| Q |
98 |
aacccggcatcaactttacatgaaggaaaccctcgatctcttagaa-----------ttgaaaatagcataatagtgtgctactctcactgcaccagact |
186 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33226600 |
agtccggcatcaactttacatgaaggaaaccctcgatctcttagaagaatgttctcattaaaaatagcataatagtgtgctactctcactgcaccagact |
33226699 |
T |
|
| Q |
187 |
tttcaactcctctctttctcttctgctcgaccacaataaggttcccatcatattcatccccaaagtatataacattcgtttttgtaacccctccccaatg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33226700 |
tttcaactcctctctttctcttctgctccaccacaataaggttcccatcatattcatccccaaagtatataacattcgtttttgtaacccctccccaatg |
33226799 |
T |
|
| Q |
287 |
attcttagtctcattaacaaaccttgttccgtaagattttccagagtccttaatttcaattggatcaagaagaacttggttaaaggaatacaatgtattg |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33226800 |
attcttagtctcattaacaaaccttgttccgtaagattttccagagtccttaatttcaattggatcaagaagaacttggttaaaggaatacaatgtattg |
33226899 |
T |
|
| Q |
387 |
gatctgtgtataacaaatgtaataaacataggtactccaaaactgaactttaatagattgatgtaaccatttttgtcatataatatcgttaatgagaatt |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33226900 |
gatctgtgtataacaaatgtaataaacataggtactccaaaactgaactttaatagattgatgtaaccatttttgtcatataatatcgttaatgagaatc |
33226999 |
T |
|
| Q |
487 |
gaacttctgaccaacgtgcggagtatgacaccgaccaagtctcagaatccatatctattcctatacgagcaccggttcccacatatatttcctggtaatg |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33227000 |
aaacttctgaccaacgtgcggagtatgacaccgaccaagtctcagaatccatatctattcctatacgagcaccggttcccacatatatttcctggtaatg |
33227099 |
T |
|
| Q |
587 |
attaagaaatcttccatttttcagctcatggcgaagactatttcccattgaatatgtaaatgttttcacaacaacgttaacttaannnnnnnnnnnnnnn |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33227100 |
attaagaaatcttccatttttcagctcatggcgaagactatttcccattgaatatgtaaatgttttcacaacaacgttaacttaa--ttttttttttttt |
33227197 |
T |
|
| Q |
687 |
gtatcgtaaatttaattttcacaatcatgcaaaatataattcaatgaacaatgatatttcgacacttacaatttctcaacat |
768 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33227198 |
gtatcgtaaatttaattttcacaatcatgcaaaatataattcaatgaacaatgatatttcaacacttacaatttctcaacat |
33227279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 234 - 530
Target Start/End: Original strand, 33223781 - 33224083
Alignment:
| Q |
234 |
tcatattcatccccaaagtatataacattcgtttttgtaacccctccccaatgattcttagtctcattaacaaaccttgttccgtaagattttccagagt |
333 |
Q |
| |
|
|||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
33223781 |
tcattttcattcccaaggtatataacgttcgtttttgtaacccctccccaatgattcttagtctcattgacaaaccttgttccgtaagatcttccagagt |
33223880 |
T |
|
| Q |
334 |
ccttaatttcaattggatcaagaagaac-ttggttaaaggaatacaat----gtattggatctgtgtataacaaatgtaataaacataggtactccaaaa |
428 |
Q |
| |
|
|||| ||||||||| ||| ||||||| | | || ||||| | | | | || | ||||| |||||||||||| |||||| | ||| | ||| |
|
|
| T |
33223881 |
ccttgatttcaatttgattaagaagatcaattgt--aaggagaagatttttgtttttagctctgtctataacaaatgtcataaactttggtgcatggaaa |
33223978 |
T |
|
| Q |
429 |
ctgaactttaatagattgatgtaaccatt---tttgtcatataatatcgttaatgagaattgaacttctgaccaacgtgcggagtatgacaccgaccaag |
525 |
Q |
| |
|
||||||||| |||||||||| |||||| | ||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
33223979 |
tggaactttaagagattgatgtcaccattaacgtcgtcatataatatcattaatgagaaatgaacttctgataaacctgcggagtatgacacagaccaag |
33224078 |
T |
|
| Q |
526 |
tctca |
530 |
Q |
| |
|
||||| |
|
|
| T |
33224079 |
tctca |
33224083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 33223575 - 33223681
Alignment:
| Q |
7 |
agcaatttcttagaagggtgttcagaaggacccttcattgaaacatccaaaacattattgtttaccacagtaaataactacttccactgaaaacccggca |
106 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||| |||| || |
|
|
| T |
33223575 |
agcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatccaaaccattattgtttaatacagt-aataactacttccgttgaaagcccgaca |
33223673 |
T |
|
| Q |
107 |
tcaacttt |
114 |
Q |
| |
|
|||||||| |
|
|
| T |
33223674 |
tcaacttt |
33223681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 590 - 765
Target Start/End: Original strand, 33224187 - 33224360
Alignment:
| Q |
590 |
aagaaatcttccatttt---tcagctcatggcgaagactatttcccattgaatatgtaaatgttttcacaacaacgttaacttaannnnnnnnnnnnnnn |
686 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
33224187 |
aagaaatcttccattttctttcaggtcatggtgaaaactatttcccattgaatatataa-tgttttcgcaacaacgttaacttaaatatatatttatttt |
33224285 |
T |
|
| Q |
687 |
gtatcgtaaatttaattttcacaatcatgcaaaatataattcaatgaacaatgatatttcgacacttacaatttctcaa |
765 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
33224286 |
-tatcgtaaatttaatttgcacaatcatgcaaa---taattcaatgaacaatgatatttcgacactcataatttctcaa |
33224360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 33223730 - 33223781
Alignment:
| Q |
151 |
tagcataatagtgtgctactctcactgcaccagacttttcaactcctctctt |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33223730 |
tagcataatagtgtgctactgtcactgcaccagacttttcaactcctctctt |
33223781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 284
Target Start/End: Complemental strand, 33245841 - 33245709
Alignment:
| Q |
152 |
agcataatagtgtgctactctcactgcaccagacttttcaactcctctctttctcttctgctcgaccacaataaggttcccatcatattcatccccaaag |
251 |
Q |
| |
|
||||||||||||||| ||||| | ||||| || |||||||||||| |||||||||||| | ||||||| ||| || || |||| |||| | ||| | |
|
|
| T |
33245841 |
agcataatagtgtgccactctgattgcacaaggcttttcaactcccggctttctcttctgttgcaccacaagaagatttccctcattttcaacaccacgg |
33245742 |
T |
|
| Q |
252 |
tatataacattcgtttttgtaacccctccccaa |
284 |
Q |
| |
|
||| ||||| |||||| |||| |||||||||| |
|
|
| T |
33245741 |
tatgcaacatccgttttcgtaatccctccccaa |
33245709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 33245964 - 33245920
Alignment:
| Q |
18 |
agaagggtgttcagaaggacccttcattgaaacatccaaaacatt |
62 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
33245964 |
agaagggtgttcataaggatccttcattgaaacatccaaatcatt |
33245920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University