View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5775-Insertion-4 (Length: 760)
Name: NF5775-Insertion-4
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775-Insertion-4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 14 - 590
Target Start/End: Complemental strand, 28730579 - 28730008
Alignment:
| Q |
14 |
gagcatcggagggagcaggtgtgggagccagagctgctactgtttcatattctgctggtcaggcgacggaagaaacctgctctgctcttgatgagcgtgg |
113 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
28730579 |
gagcatcggaaggagcaggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgactgaagaaacctgctctgctcttgatgggcgtgg |
28730480 |
T |
|
| Q |
114 |
tggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcaggtcaggccaatgattgaaattgaagatcaccatggcctgtgagtgtga |
213 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
28730479 |
tggctgtgctgctgatgtcactgctgcaacaggtgtgtctcccatgcctcaggtcaggccaatgtttgagattgaagatcaccatggcctgtgagtgtga |
28730380 |
T |
|
| Q |
214 |
tggttcgatgatgacgaagattgctatttacttcattctctgctgaagtaaaactatatgaaatttgtcgttaataagtttacactgttgttcatctaat |
313 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
28730379 |
tggtttgatcatgacgaagattgcgatttacttctttctctgctgaagtaaaactatatgaaatttgtagttaataagtttacaccgttgttcatctaat |
28730280 |
T |
|
| Q |
314 |
gtagctaattcacaccgttgcttagttctttttagtttgtgctgcacttctttgtctcatgaattgtaactctgaatttgtagttagttcacactattat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
28730279 |
gtagctaattcacaccgttgcttagttctttttagtttgtgctgcacttctttgtctcatgaagtgaaactctgaatttgtagttaattcacactattat |
28730180 |
T |
|
| Q |
414 |
ccatatatactctatgttgcttaactagttcgttaataaaacaatttgtggatttagtctttacagattttcttgagagattatcttgtgtatgatgtat |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28730179 |
ccatatatactctatgttgcttaactagttcgttaataa-------tgtggatttagtctttacagattttctt--gagattatcttgtgtatgatgtat |
28730089 |
T |
|
| Q |
514 |
caattcatggtttcttacaatttgtgtatg----atttagtctttggggaagtatctgttttcacaggcttatgacttttg |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28730088 |
caattcatggtttcttacaatttgtgtatgatttatttagtctttggggaagtatctgttttcacaggcttatgaattttg |
28730008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 633 - 760
Target Start/End: Complemental strand, 28729001 - 28728874
Alignment:
| Q |
633 |
atctgtttttcatctgcagggccaaaatacgtgtgtgaattagatatcctaggattatagaagatgctagtttaagtacaatccatttcatagtacattt |
732 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28729001 |
atctgtttttcgtctgcagggccaaaatacgtgtgtgaattagatatactaggattatagaagaggctagtttaagtacaatccatttcatagtacattt |
28728902 |
T |
|
| Q |
733 |
cctcctggacatttttctttctccatct |
760 |
Q |
| |
|
|||||||| |||||||||||| |||||| |
|
|
| T |
28728901 |
cctcctggtcatttttctttcgccatct |
28728874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 629
Target Start/End: Complemental strand, 28730092 - 28730058
Alignment:
| Q |
595 |
gtatcaattcatggtttcttacaatttgtgtatga |
629 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730092 |
gtatcaattcatggtttcttacaatttgtgtatga |
28730058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 33078556 - 33078592
Alignment:
| Q |
272 |
tgaaatttgtcgttaataagtttacactgttgttcat |
308 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33078556 |
tgaaatttgtagttaataagtttacactgttgttcat |
33078592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 489
Target Start/End: Complemental strand, 38121005 - 38120529
Alignment:
| Q |
14 |
gagcatcggagggagcaggtgtgggagccagagctgctactgtttcatattctgctggtcaggcgacggaagaaacctgctctgctcttgatgagcgtgg |
113 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
38121005 |
gagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggccacggaagaaacctgctctgctcctgatggacgtgg |
38120906 |
T |
|
| Q |
114 |
tggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcaggtcaggccaatgattgaaattgaagatcaccatggcctgtgagtgtga |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| || |
|
|
| T |
38120905 |
tggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcga |
38120806 |
T |
|
| Q |
214 |
tggttcgatg---atgacgaagattgctatttacttcattctctgctgaagtaaaactatatgaaatttgtcgttaataagtttacactgttgttcatct |
310 |
Q |
| |
|
|| ||||||| |||| ||||||||| |||| ||| |||||||||||||| || || |||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
38120805 |
tgcttcgatgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttacactgttgtccatct |
38120706 |
T |
|
| Q |
311 |
aatgtagctaattcacaccgttgcttagttctttttagtttgtgctgcacttctttgtctcatgaattgtaactctgaatttgtagttagttcacactat |
410 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||||| |
|
|
| T |
38120705 |
aatgtagctaattcacacggttccttagttctttttagtttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcacactat |
38120606 |
T |
|
| Q |
411 |
tatccatatatactctatgttgcttaactagttcgttaataaaacaatttgtggatttagtctttacagattttcttga |
489 |
Q |
| |
|
||||| | ||| ||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38120605 |
tatcc--aactacactatgttgcttaaatagttcttcaataaaacaatttgtggatttagtctttacagattttcttga |
38120529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 38609118 - 38609401
Alignment:
| Q |
14 |
gagcatcggagggagcaggtgtgggagccagagctgctactgtttcatattctgctggtcaggcgacggaagaaacctgctctgctcttgatgagcgtgg |
113 |
Q |
| |
|
|||| ||||| ||||||||||| |||||| |||| | ||| | | | ||||| | ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38609118 |
gagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtgg |
38609217 |
T |
|
| Q |
114 |
tggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcaggtcaggccaatgattgaaattgaagatcaccatggcctgtgagtgtga |
213 |
Q |
| |
|
|||||||||||||| ||||||| || || ||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| || |
|
|
| T |
38609218 |
tggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcga |
38609317 |
T |
|
| Q |
214 |
tggttcgatgatgacgaagattgctatttacttcattctctgctgaagtaaaactatatgaaatttgtcgttaataagtttaca |
297 |
Q |
| |
|
|| ||||||||||| ||||||||| |||| ||| |||||||||||||| || || |||||||||||| ||||||||||||||| |
|
|
| T |
38609318 |
tgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttaca |
38609401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 38793901 - 38794184
Alignment:
| Q |
14 |
gagcatcggagggagcaggtgtgggagccagagctgctactgtttcatattctgctggtcaggcgacggaagaaacctgctctgctcttgatgagcgtgg |
113 |
Q |
| |
|
|||| ||||| ||||||||||| |||||| |||| | ||| | | | ||||| | ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38793901 |
gagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggcgacggaagaaacctgctctgctcttgatggacgtgg |
38794000 |
T |
|
| Q |
114 |
tggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcaggtcaggccaatgattgaaattgaagatcaccatggcctgtgagtgtga |
213 |
Q |
| |
|
|||||||||||||| ||||||| || || ||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| || |
|
|
| T |
38794001 |
tggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcga |
38794100 |
T |
|
| Q |
214 |
tggttcgatgatgacgaagattgctatttacttcattctctgctgaagtaaaactatatgaaatttgtcgttaataagtttaca |
297 |
Q |
| |
|
|| ||||||||||| ||||||||| |||| ||| |||||||||||||| || || |||||||||||| ||||||||||||||| |
|
|
| T |
38794101 |
tgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttaca |
38794184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 34592845 - 34592957
Alignment:
| Q |
143 |
caggtgtgtctcctatgcctcaggtcaggccaatgattgaaattgaagatcaccatggcctgtgagtgtgatggttc---gatgatgacgaagattgcta |
239 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
34592845 |
caggtgtgtctcccgtgcctcgggtcaggccaatggttgagattgaagatcaccatggcctgtgagtgtgatgcttcaatgatgatgatgaagattgcgg |
34592944 |
T |
|
| Q |
240 |
tttacttcattct |
252 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
34592945 |
tttacttctttct |
34592957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 3928143 - 3928106
Alignment:
| Q |
330 |
gttgcttagttctttttagtttgtgctgcacttctttg |
367 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
3928143 |
gttgcttagatctttttagtttgtgcagcacttctttg |
3928106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University