View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5775-Insertion-5 (Length: 720)
Name: NF5775-Insertion-5
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 8 - 720
Target Start/End: Complemental strand, 8081571 - 8080858
Alignment:
| Q |
8 |
ttttttacaatagcgacccttggttttctca---tagaggatcgaaattctgattatttatttaattagatatagtgaattcttagaatgcaataccata |
104 |
Q |
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| T |
8081571 |
ttttttacaatcgcgacccttggttttctcactttagaggatcgaaattctgattatttatttaattagatatagtgaattcttataatgcaataccata |
8081472 |
T |
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| Q |
105 |
tttcaatatagatgttctgcctgaaacaataaaataaaacatggccttcaattcttggtaaacaaaaatgctcatatgttgttcattgatcgtgtattct |
204 |
Q |
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| T |
8081471 |
tttcaatatagatgttctgcctgaaacaataaaataaaacatggccttcaattcttggtaaacaaaaatgctcatatgttgttcattgatcgtgtattct |
8081372 |
T |
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| Q |
205 |
tatcatgcatctctgtgtataatctggtacgtctctatctctcttaccatcttcaatggatacttgatcatgttgtttaactacaggaatgacaacgaga |
304 |
Q |
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| T |
8081371 |
tatcatgcatctctgtgtataatctggtacgtctctatctctcttaccatcttcaatggatacttgatcatgttgtttaactacagtaatgacaatgaga |
8081272 |
T |
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| Q |
305 |
atcgcaattctaagggacactagaaggaaattgggcggtgctttaggattcaataggttgattcattccgtgcctcaatctcctcctttagctgggatca |
404 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8081271 |
atcgcaattctaagggacactagaaggaaattgggtggtgctttaggattcaataggttgattcattccgtgcctcaatctcctcctttagctgggagca |
8081172 |
T |
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| Q |
405 |
ttgaccatgggattcagtcgttgaaacccgttttgcctgaattttgttctccaacgttctcttttggtggctctatggagctcatggctgtgccaaaaag |
504 |
Q |
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| T |
8081171 |
ttgaccatgggattcagtcgttgaaacccgttttgcctgaattttgttctccaacgttctcttttggtggctctatggagctcatggctgtgccaaaaag |
8081072 |
T |
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| Q |
505 |
gaaggtaaggaatcttcataacttctcgtcgttttggacagatgttgaattttactgactgatgcttcaagataaatgatgtgagtgcaatgatttgcac |
604 |
Q |
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| T |
8081071 |
gaaggtaaggaatcttcataacttctcgtcgttttggacagatgttgaattttactgactgatgcttcaagataaatgatgtgagtgcaatgatttgcac |
8080972 |
T |
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| Q |
605 |
tttgtgttannnnnnnaatttcacattctataacttttgtgatggttttgtttgtcatgtagacttctcctcataaaagaggaataagaaatgggccaaa |
704 |
Q |
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| T |
8080971 |
--tgtgttatttttttaatttcacattctataacttttgtgatggttttgtttgtcatgtagacttctcctcataaaagaggaataagaaatgggccaaa |
8080874 |
T |
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| Q |
705 |
agctttgaaacctgtt |
720 |
Q |
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| T |
8080873 |
agctttgaaacctgtt |
8080858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 42 - 720
Target Start/End: Original strand, 29815418 - 29816093
Alignment:
| Q |
42 |
aggatcgaaattctgattatttatttaattagatatagtgaattcttagaatgcaataccatatttcaatatagatgttctgcctgaaacaataaaataa |
141 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
29815418 |
aggatcgaaattctgattattta----attagatataatgaattcttagaatgcaataccatatttcaatagagatgttctgcctgaaacaataaa-taa |
29815512 |
T |
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| Q |
142 |
aacatggccttcaattcttggtaaacaaaaatgctcatatgttgttcattgatcgtgtattcttatcatgcatctct--gtgtataatctggtacgtctc |
239 |
Q |
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| T |
29815513 |
aacatggccttcaatttttgctaaacaaaattgctcatatgttgttcattgatcgtgtattcttagcatgcatctctttgtgtataatctgctacgtctc |
29815612 |
T |
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| Q |
240 |
tatctctcttaccatcttcaatggatacttgatcatgttgtttaactacaggaatgacaacgagaatcgcaattctaagggacactagaaggaaattggg |
339 |
Q |
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| T |
29815613 |
tatctctcttactatcttcaatggttacctgatcatgttgtttaactacaggaaggacaatgagaatcgcaattctgagggacactagaaggaaattggg |
29815712 |
T |
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| Q |
340 |
cggtgctttaggattcaataggttgattcattccgtgcctcaatctcctcctttagctgggatcattgaccatgggattcagtcgttgaaacccgttttg |
439 |
Q |
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| T |
29815713 |
tggtgctttaggattcaataggttgattcattccttgcctcaatctcctcctttagctgggagcattgaccatgggattcagtcgttgaagcccgttttg |
29815812 |
T |
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| Q |
440 |
cctgaattttgttctccaacgttctcttttggtggctctatggagctcatggctgtgccaaaaaggaaggtaaggaatcttcataacttctcgtcgtttt |
539 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
29815813 |
cctgaatttagttctccaacgttctcttttggtggctctatggagctcatggctgtgccaaaaaggaaggtaaggtatcttcataacttctcgtcatttt |
29815912 |
T |
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| Q |
540 |
ggacagatgttgaattttactgactgatgcttcaa-gataaatgatgtgagtgcaatgatttgcactttgtgttannnnnnnaatttcacattctataac |
638 |
Q |
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||| ||||||||| ||||||||||||||| ||||| || ||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||| |
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| T |
29815913 |
ggaaagatgttgagttttactgactgatgtttcaaggagaaatgat-tgagtgcaatgatttgcactttgtattatttttttaatttctcattctataac |
29816011 |
T |
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| Q |
639 |
ttttgtgatggttttgtttgtcatgtagacttctcctcataaaagaggaataagaaatgggccaaaagctttgaaacctgtt |
720 |
Q |
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| T |
29816012 |
ttttgtgatggttttgtttgtcatgtagacttctcctcataaacgaggaataagaaatgggccaaaagctttgaaacctgtt |
29816093 |
T |
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