View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5775-Insertion-6 (Length: 712)

Name: NF5775-Insertion-6
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5775-Insertion-6
NF5775-Insertion-6
[»] chr1 (3 HSPs)
chr1 (7-487)||(51845572-51846055)
chr1 (488-712)||(51845284-51845506)
chr1 (394-484)||(9393618-9393708)
[»] chr2 (4 HSPs)
chr2 (7-174)||(44555434-44555601)
chr2 (7-174)||(44544792-44544959)
chr2 (172-261)||(44546149-44546238)
chr2 (176-261)||(44555768-44555853)
[»] chr4 (4 HSPs)
chr4 (11-83)||(2573258-2573330)
chr4 (417-487)||(5595319-5595389)
chr4 (417-487)||(5601512-5601582)
chr4 (417-487)||(2893235-2893305)
[»] chr3 (2 HSPs)
chr3 (378-487)||(19452409-19452518)
chr3 (379-454)||(2733087-2733162)
[»] scaffold0043 (1 HSPs)
scaffold0043 (377-473)||(68120-68216)
[»] chr7 (2 HSPs)
chr7 (417-487)||(42783983-42784053)
chr7 (417-487)||(48479840-48479910)


Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 487
Target Start/End: Complemental strand, 51846055 - 51845572
Alignment:
Q  7 aataacagggagactatcacaattgcatatctcaatcatgaatccatctgggtcatgaaaaaacaactgatccacttgaattccattttcctcaaccatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51846055 aataacagggagactatcacaattgcatatctcaatcatgaatccatctgggtcatgaaaaaacaactgatccacttgaattccattttcctcaaccatt 51845956  T
Q  107 gcacgttttaaaccaattttcatatccttcaaatatttctctactgcatccatgctttcatcacactggaatgagatatgcttatcctttgtattaattt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51845955 gcacgttttaaaccaattttcatatccttcaaatatttctctactgcatccatgctttcatcacactggaatgagatatgcttatcctttgtattaattt 51845856  T
Q  207 cattcttccttggaatcttttcagggtcctctgccaggagcaagtgaattccaat-ccgtgggcaaatagccatg-cccgtcaaaatcaaacgattcagg 304  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||||||||| |||| |||||||||||||| ||||    
T  51845855 cattcttccttggaatcttttcagggtcctctgccagcagcaaatgaattccaatcccgtggccaaatagccatgccccgccaaaatcaaacgatccagg 51845756  T
Q  305 ccttacgatgaaaatgaa-tcaagaacttttttgtagaaggcaacagnnnnnnncattgatttggagagaagggatgtaatatcccgcgaaattttaaat 403  Q
    |||||||||| ||||||| |||||||||||||  |||||||||||||       |||||||||| ||||||||| |||||||||||||||||||||||||    
T  51845755 ccttacgatggaaatgaattcaagaactttttcatagaaggcaacagtttctttcattgatttgcagagaaggggtgtaatatcccgcgaaattttaaat 51845656  T
Q  404 ggactaatgtatcagttgaacatgtcagaacaaaaataatttatgaagggtaaattatttattgagaaatgcgaagatattcgg 487  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  51845655 ggactaatgtatcagttgaacatgtcagaacaaaaataatttctgaaaggtaaattatttattgagaaatgcgaaaatattcgg 51845572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 488 - 712
Target Start/End: Complemental strand, 51845506 - 51845284
Alignment:
Q  488 attgtatcttttttcttgaaggggcattttgataacttgggacttgatatttttaaacaaggggtaaaatggtaatcttgccactcaagattatttaagt 587  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51845506 attgtatcttttttcttgaagg--cattttgataacttgggacttgatatttttaaacaaggggcaaaatggtaatcttgccactcaagattatttaagt 51845409  T
Q  588 ggaaaatccaccagcttccacattattctactcacctctctctctaggttaacaatttttctcctccctttctctagaattcggccctcacccacccaaa 687  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51845408 ggaaaatccacaagcttccacattattctactcacttctctctctaggttaacaatttttctcctccctttctctagaattcgcccctcacccacccaaa 51845309  T
Q  688 atcctaacttcatcaaattcacaat 712  Q
    |||||||||||||||||||||||||    
T  51845308 atcctaacttcatcaaattcacaat 51845284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 394 - 484
Target Start/End: Complemental strand, 9393708 - 9393618
Alignment:
Q  394 aattttaaatggactaatgtatcagttgaacatgtcagaacaaaaataatttatgaagggtaaattatttattgagaaatgcgaagatatt 484  Q
    ||||||||||  ||||  ||||||||||||||||| |||||| ||||||||| | ||  || |||||||||||||||||||| ||||||||    
T  9393708 aattttaaataaactatcgtatcagttgaacatgttagaacataaataatttctaaaaagttaattatttattgagaaatgcaaagatatt 9393618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 44555434 - 44555601
Alignment:
Q  7 aataacagggagactatcacaattgcatatctcaatcatgaatccatctgggtcatgaaaaaacaactgatccacttgaattccattttcctcaaccatt 106  Q
    ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  44555434 aataacaggaagactatcacaattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccatt 44555533  T
Q  107 gcacgttttaaaccaattttcatatccttcaaatatttctctactgcatccatgctttcatcacactg 174  Q
    ||||||||  | ||||||||| |||| |||| |||||| ||||||| |||||||||||||||||||||    
T  44555534 gcacgtttacagccaattttcttatcattcagatatttttctactgtatccatgctttcatcacactg 44555601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 44544792 - 44544959
Alignment:
Q  7 aataacagggagactatcacaattgcatatctcaatcatgaatccatctgggtcatgaaaaaacaactgatccacttgaattccattttcctcaaccatt 106  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| |    
T  44544792 aataactgggagactatcacaattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccaat 44544891  T
Q  107 gcacgttttaaaccaattttcatatccttcaaatatttctctactgcatccatgctttcatcacactg 174  Q
    ||||| ||  || |||||||  |||| |||| |||||||||||||||||| |||||| ||||||||||    
T  44544892 gcacgcttacaaacaatttttttatcattcagatatttctctactgcatcaatgcttccatcacactg 44544959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 44546149 - 44546238
Alignment:
Q  172 ctggaatgagatatgcttatcctttgtattaatttcattcttccttggaatcttttcagggtcctctgccaggagcaagtgaattccaat 261  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||   ||||||||||| |||||    
T  44546149 ctggaatgagatatgattatcctttgtattaatttccttcttccttggaattttttcagggtcttctgccttcagcaagtgaataccaat 44546238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 44555768 - 44555853
Alignment:
Q  176 aatgagatatgcttatcctttgtattaatttcattcttccttggaatcttttcagggtcctctgccaggagcaagtgaattccaat 261  Q
    ||||| ||||| |||||||||| ||||||||| |||||||||||||| ||||||||||| |||||| | |||||||||||||||||    
T  44555768 aatgatatatgattatcctttggattaatttcgttcttccttggaatattttcagggtcttctgcctgtagcaagtgaattccaat 44555853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 2573330 - 2573258
Alignment:
Q  11 acagggagactatcacaattgcatatctcaatcatgaatccatctgggtcatgaaaaaacaactgatccactt 83  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||| ||||    
T  2573330 acaggaagactatcacaattgcatatctcaatcatgaaaccatctgggtcatggaaaaatagctgatctactt 2573258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 5595389 - 5595319
Alignment:
Q  417 agttgaacatgtcagaacaaaaataatttatgaagggtaaattatttattgagaaatgcgaagatattcgg 487  Q
    |||||| |||||||||||  |||||| || | |||||| || |||||||||||||| ||||||||||||||    
T  5595389 agttgagcatgtcagaacggaaataaattctaaagggttaaatatttattgagaaaagcgaagatattcgg 5595319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 5601582 - 5601512
Alignment:
Q  417 agttgaacatgtcagaacaaaaataatttatgaagggtaaattatttattgagaaatgcgaagatattcgg 487  Q
    |||||| |||||||||||  |||||| || | |||||| || |||||||||||||| ||||||||||||||    
T  5601582 agttgagcatgtcagaacggaaataagttctaaagggttaaatatttattgagaaaagcgaagatattcgg 5601512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 2893235 - 2893305
Alignment:
Q  417 agttgaacatgtcagaacaaaaataatttatgaagggtaaattatttattgagaaatgcgaagatattcgg 487  Q
    ||||||||||||||||||  ||||||||| | | |||  || |||||||||||||| || |||||||||||    
T  2893235 agttgaacatgtcagaacggaaataatttctaatgggctaaatatttattgagaaaagctaagatattcgg 2893305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 378 - 487
Target Start/End: Complemental strand, 19452518 - 19452409
Alignment:
Q  378 atgtaatatcccgcgaaattttaaatggactaatgtatcagttgaacatgtcagaacaaaaataatttatgaagggtaaattatttattgagaaatgcga 477  Q
    |||||||||||||| |||||||||||   |   |||||||||||||||||| |||||  || |||||| |||| ||| ||||||||||||||||| ||||    
T  19452518 atgtaatatcccgctaaattttaaataatccgttgtatcagttgaacatgttagaactgaagtaatttttgaaaggttaattatttattgagaaacgcga 19452419  T
Q  478 agatattcgg 487  Q
     |||||||||    
T  19452418 cgatattcgg 19452409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 379 - 454
Target Start/End: Original strand, 2733087 - 2733162
Alignment:
Q  379 tgtaatatcccgcgaaattttaaatggactaatgtatcagttgaacatgtcagaacaaaaataatttatgaagggt 454  Q
    ||||||||||||| ||||| || || |||| || ||||||||||   ||||| |||||||||||||||||||||||    
T  2733087 tgtaatatcccgctaaattctatatagactgatatatcagttgagtgtgtcataacaaaaataatttatgaagggt 2733162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 68120 - 68216
Alignment:
Q  377 gatgtaatatcccgcgaaattttaaatggactaatgtatcagttgaacatgtcagaacaaaaataatttatgaagggtaaattatttattgagaaat 473  Q
    ||||||||||||||| ||||| ||||| || | || |||||||||||  ||||| |||||||||||||||||||| || || ||| |||||||||||    
T  68120 gatgtaatatcccgctaaattctaaatagagtgatatatcagttgaatgtgtcataacaaaaataatttatgaagagttaactatatattgagaaat 68216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 42783983 - 42784053
Alignment:
Q  417 agttgaacatgtcagaacaaaaataatttatgaagggtaaattatttattgagaaatgcgaagatattcgg 487  Q
    |||||| |||||||||||  ||||||||| | |||||| || |||||||||||||| ||||||||||||||    
T  42783983 agttgagcatgtcagaacggaaataatttctaaagggttaaatatttattgagaaaagcgaagatattcgg 42784053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 48479910 - 48479840
Alignment:
Q  417 agttgaacatgtcagaacaaaaataatttatgaagggtaaattatttattgagaaatgcgaagatattcgg 487  Q
    |||||| |||||||||||  ||||||||| | |||||| || |||||||||||||| ||||||||||||||    
T  48479910 agttgagcatgtcagaacggaaataatttctaaagggttaaatatttattgagaaaagcgaagatattcgg 48479840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University