View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5775-Insertion-9 (Length: 591)
Name: NF5775-Insertion-9
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775-Insertion-9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 591
Target Start/End: Original strand, 43256107 - 43256687
Alignment:
| Q |
8 |
ctatagcccctgctgctcccaacattgcgaagcggccgttgattacctcgccgtatgctaaccattctggctcaatgaatccaccgactccttcaggatc |
107 |
Q |
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| T |
43256107 |
ctatagctcctgctgctcccaacattgcgaagcggccgttgattatctcgccgtatgctaaccattctggctcaatgaatccaccgactccttcaggatc |
43256206 |
T |
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| Q |
108 |
tgaaagtcctagagggtcaaatccaaagtcaccaggaaggctgcaagtgatgatgaggccaaataaagtcaatttcatacttgccacatatagtgttact |
207 |
Q |
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| T |
43256207 |
tgaaagtcctagagggtcaaatccaaagtcaccaggaaggctgcaagtgatgatgaggccaaataaagtcaatttcatacttgacacata--gtgttact |
43256304 |
T |
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| Q |
208 |
caacaaagttgcatgcatatctacatgttgtatagttgtaatatgggtgctttgttatccaagcatccgagcttatattaacacaatcaattgtctaaat |
307 |
Q |
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| T |
43256305 |
caacaaagttgcatgcatatctacatgttgtatagttgtaatatgggtgctttgttatccaagcatccgagcttatattaacacaatcacttgtctaaat |
43256404 |
T |
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| Q |
308 |
atttggatgaaactataaaaataactttaaatgtgtccacaagctgtctttagattatttcgataggttttgtataataattattaaaataaatagttta |
407 |
Q |
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| T |
43256405 |
atttggatgaaactataaaaataactttaaatgtgtccacaagctgtctttagattatttcgataggttttgtataataattattaaaataaatagttta |
43256504 |
T |
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| Q |
408 |
atgatttcctctaaaactataaaattagattaagcaaaatcataaacgataaatgatataataagtgcttaatcnnnnnnnnntctcaaaagccttctag |
507 |
Q |
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| T |
43256505 |
atcatttcctctacaactataaaattagattaagcaaaatcataaacgataaatgatataataagtgcttaatcaaaaaaaattctcaaaagccttctag |
43256604 |
T |
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| Q |
508 |
ggtcttagagtcacaaaacatctaccatacaaagttaccacaagtaatatnnnnnnnntatattggtactcaaacaagtgttat |
591 |
Q |
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| T |
43256605 |
ggtcttagagtcacaaaacatctaccatacaaagttaccacaagtaatat-aaaaaaatatattgttactcaaacaagtgttat |
43256687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 43259373 - 43259634
Alignment:
| Q |
8 |
ctatagcccctgctgctcccaacattgcgaagcggccgttgattacctcgccgtatgctaaccattctggctcaatgaatccaccgactccttcaggatc |
107 |
Q |
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| T |
43259373 |
ctatagctccggctgctcccaacattgcaaatcggccgttgattatctcaccgtatgctaaccatcttggttcaatgaatccaccggttccttcgggatc |
43259472 |
T |
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| Q |
108 |
tgaaagtcctagagggtcaaatccaaagtcaccaggaaggctgcaagtgatgatgaggccaaataaagtcaatttcatacttgccacatatagtgttact |
207 |
Q |
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| T |
43259473 |
tgaaagtcctagagggtcaaatccaaagtcacccggaaggctgcaagtgatgatgaggccaaataaagtcaatttcatacttg--acacatagtgttact |
43259570 |
T |
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| Q |
208 |
caacaaagttgcatgcatatctacatgttgtatagttgtaatatgggtgctttgttatccaagc |
271 |
Q |
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| T |
43259571 |
caacaaagttgcatgcatatctacatgttgtatagttgtgttatgggtgctttgttatccaagc |
43259634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 286 - 557
Target Start/End: Original strand, 43259973 - 43260243
Alignment:
| Q |
286 |
taacacaatcaattgtctaaatatttggatgaaactataaaaataactttaaatgtgtccacaagctgtctttagattatttcgataggttttgtataat |
385 |
Q |
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| T |
43259973 |
taacgcaatcacttgtctaagtatttggatgaaactataaagataactttaaatgtgttcacaagttgtctttagattatttccataggttttgtagaat |
43260072 |
T |
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| Q |
386 |
aa-ttattaaaataaatagtttaatgatttcctctaaaactataaaattagattaagcaaaatcataaacgataaatgatataataagtgcttaatcnnn |
484 |
Q |
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| T |
43260073 |
aatttattaaagtaaatagtttaatcatttcatctactactgtaaaattagattaagcataatcataaacgataaatg--ataattagtgcttaatcgaa |
43260170 |
T |
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| Q |
485 |
nnnnnntctcaaaagccttctagggtcttagagtcacaaaacatctaccatacaaagttaccacaagtaatat |
557 |
Q |
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| T |
43260171 |
aagatttcgcaaaagccttctgagatcttagactcacaaaacatctaccagacatagttaccacaagtaatat |
43260243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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