View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5775_low_1 (Length: 874)
Name: NF5775_low_1
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 583; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 8 - 642
Target Start/End: Original strand, 53674494 - 53675128
Alignment:
| Q |
8 |
aaaaaagaaaatagcaaggtacattatttttcagtaatttgatttgtattttgttaattaacattactttagaaaaattgaattaccttgaaaatctgtt |
107 |
Q |
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| T |
53674494 |
aaaaaggaaaatatcaaggtacattatttttcagtaatttgatttgtattttgttaattaacattactttagaaaaactgaattaccttgaaaatctgtt |
53674593 |
T |
|
| Q |
108 |
gaattgatattctgttctgtttttgtgctccttccaactgagacaattgtgcagccttcatgcacatgctcaaagcaatacttggtaattcctttagagg |
207 |
Q |
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| T |
53674594 |
gaattgatattctgttctgtttttgtgttccttccaactgagacaattgtgcagccttcatgcacatgctcaaagcaataattggtaattcctttagagg |
53674693 |
T |
|
| Q |
208 |
tgccaattctataaaaaatgataaagggggttgtcaaatgcttagatctttataaatgatttgaataaatgttacactgatgagttcttacttattcgtt |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
53674694 |
tgccaattctataaacaatgataaagggggttgtcaaatgcttagatctttataaatgatttgaataaatgttacactgatgagttcttacttaattgtt |
53674793 |
T |
|
| Q |
308 |
ttgtttcttgttccgccaagaagaagaagaaaatcagcagaaattgacttggcttcctccactaaaccaccacctactgtggaactcaatgccacttttg |
407 |
Q |
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| T |
53674794 |
ttgtttcttgttccgccaagaagaagaagaaaatcagcagaaattgacttggcttcctccactaaaccaccacctactgtggaactcaatgccacttttg |
53674893 |
T |
|
| Q |
408 |
cctccaaattaacctgataatgatgttttcatcagcattcttcgactctaatagcaaaccatattaaagtctaaccattatatgacagacagggtcaact |
507 |
Q |
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| T |
53674894 |
cctccaaattaacctgataatgatgttttcatcagcattcttcgactctaatagcaaaccatattaaagtctaaccattatatgacagacagggtcaact |
53674993 |
T |
|
| Q |
508 |
atatttttgattccctctaaaatactcttcatcttagtacttactaaaatttggtcccctccatgtctctagaatccatccctattcaatgtcgtttttt |
607 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
53674994 |
atattttttattccctctaaaatactcttcatcttagtacttactaaaatttggtccactccatgtctctagaatccatccctatcgaatgtcgtttttt |
53675093 |
T |
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| Q |
608 |
gcggactaatcagaaggaatgcaaatcacgtaaac |
642 |
Q |
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| T |
53675094 |
gcagactaatcagaaggaatgcaaatcacgtaaac |
53675128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 643 - 856
Target Start/End: Original strand, 53675181 - 53675391
Alignment:
| Q |
643 |
atgtgttgcattccccctatccaataacaaaacattattttttcctcaattttattgatgatggagacacatatatacttgtatgatttgattcacgtgt |
742 |
Q |
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| T |
53675181 |
atgtgttgcattccccctatccaataacaaaacattattttttccccaattttattgatgatggagacacatatatacttgtatgatttgattcacgtgt |
53675280 |
T |
|
| Q |
743 |
gtttgaaattaattacctgtttggaccaacaacaagtctgtgcaaattctccaagcacagatataacatatgcttttgcttgcctaagttgtgattgtct |
842 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53675281 |
gtttgaaattaattacctgtttggac---caacaagtctgtgcaaattctccaagcacagatataacatatgcttttgcttgcctaagttgtgattgtct |
53675377 |
T |
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| Q |
843 |
tcttctcactgata |
856 |
Q |
| |
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|||||||||||||| |
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| T |
53675378 |
tcttctcactgata |
53675391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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