View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5775_low_2 (Length: 547)
Name: NF5775_low_2
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 246 - 531
Target Start/End: Complemental strand, 40085860 - 40085565
Alignment:
| Q |
246 |
caagatacagtggtaatcatttatttaatttgtgaaatttaatatat--------gtat--aatagagtaactcagcttgaagttatctgtcgtgtaact |
335 |
Q |
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| T |
40085860 |
caagatacagtggtaatcatttatttaatttgtgaaagttaatatgtataataaagtattaaatagagtaactcagcttgaagttatctgtcgtgtaact |
40085761 |
T |
|
| Q |
336 |
taagcttccctacagaagctgctaataatacagctagctgtccattttctttatctatattaagggccctagctctaattgccaatttttgaagtaatct |
435 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
40085760 |
taagcttccctacagaagctgctaataatacagctagctgtccattttctttatctatattaagggccctaactctaattgccattttttgaagtaatct |
40085661 |
T |
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| Q |
436 |
tgaaacatgacnnnnnnngataagagcaaaggaagcaaactcaccaggtacatgaaggcacccttaaggttcctggtaaaggtaaaggacatgtat |
531 |
Q |
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| T |
40085660 |
tgaaacatgacaaaaaaagataagagcaaaggaagcaagctcaccaggtacatgaaggcacccttaaggttcctggtaaagttaaaggacatgtat |
40085565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 77 - 224
Target Start/End: Complemental strand, 40086037 - 40085890
Alignment:
| Q |
77 |
ttagagttgcaccattggagtaaaatatgagtgagttgcttcagaataacgtggctttaattgggtccacaaaattattttagatgagttcaacattttg |
176 |
Q |
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| T |
40086037 |
ttagagttgcactattggagtaaaatatgagtgagttgcttcagaataacgtggctttaattggatccacaaaattactttagatgagttcaacattttg |
40085938 |
T |
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| Q |
177 |
gtggtaccttggtaccattctatttaataatatcttttttggcttttc |
224 |
Q |
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| T |
40085937 |
gtggtactttggtaccattctatttaataatatcttttttggcttttc |
40085890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 11730659 - 11730623
Alignment:
| Q |
83 |
ttgcaccattggagtaaaatatgagtgagttgcttca |
119 |
Q |
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| T |
11730659 |
ttgcaccattggagtaaaaaataagtgagttgcttca |
11730623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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