View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5775_low_3 (Length: 444)
Name: NF5775_low_3
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 50008672 - 50008339
Alignment:
| Q |
14 |
agattgatacaaacaagtcttcattagtaacattcatttgcaccttgtttatgatgtggcatctgaaaataatgattccgtaccagaatatcatcttaca |
113 |
Q |
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| T |
50008672 |
agattgatacaaacaagtcttcattagtaacattcatttgcaccttgtttatgatgtggcatctgaaaataatgattccgtaccagaatatcatcttaca |
50008573 |
T |
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| Q |
114 |
tcgatttgaaaatgtctattcaactgtttgtttgcactttgcacggtccagagtataagttgtagggttgaatggctcgatgcaggtgcaccatgggcaa |
213 |
Q |
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| T |
50008572 |
tcgatttgaaaatgtctattcaactgtttgtttgcactttgcacggtccagagtataagttgtagggttgaatggctcgatgcaggtgcaccatgggcaa |
50008473 |
T |
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| Q |
214 |
ccaccatatagttgcgcaccattctcagcacaaaagctgaaattttcatgaatgatagacaactacatagatttcaaagaaacttcaagctaggagggaa |
313 |
Q |
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| T |
50008472 |
ccaccatatagttgcgcaccattctcagcacaaaagctgaaattttcatgaatgatagacaactacatagatttcaaagaaacttcaagctaggagggaa |
50008373 |
T |
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| Q |
314 |
atgcatctggccattgaatatctacaaagcccca |
347 |
Q |
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| T |
50008372 |
atgcatctggccattgaatatctacaaagcccca |
50008339 |
T |
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